PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112792.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 537aa    MW: 60183.4 Da    PI: 5.6176
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112792.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4501.5e-1371685372374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+avs++dl +aq+l+ +l+ ++s +g+p+qRl ay++e+L a+la+s+s++ykal+++e +   sse l+++++++e++P++kf+++
  XP_010112792.1 168 KQVLISCAKAVSDNDLLMAQWLMDELRRIVSVSGEPIQRLGAYMLEGLVAKLASSGSNIYKALKCKEPA---SSEMLSYMHILYELCPYFKFGYM 259
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++  s   +   le +g++L+k+Ae+++vpfef++ +  + +++
  XP_010112792.1 260 SANGAIAEAMKDENRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDTMSAyaRGGGLEIVGRKLSKLAETFKVPFEFHA-ADMSGSEV 353
                     *****************************************************887789999************************.7889**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+Lr++pgEalaVn+++ lh++ desvs++++rd++L+lvkslsPk v++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++eri+
  XP_010112792.1 354 QLEDLRIQPGEALAVNFAFVLHHMADESVSTQNHRDRLLRLVKSLSPKCVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPRGHKERIN 448
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+re+vn++ace aer+erhe l+kW+ rl++aGF+p+pls+ +++++k+ll+++ ++ y++ee++g+l+lgW++r Lv+ SaW+
  XP_010112792.1 449 VEQHCLAREVVNIIACEAAERVERHELLGKWKLRLKMAGFSPYPLSSLVNATIKTLLENYCNK-YKLEERDGALYLGWMNRFLVTSSAWK 537
                     *************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.538141518IPR005202Transcription factor GRAS
PfamPF035145.2E-135168537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSNELYYRPI QEAEAYCLPQ FRSLDQELCY NDSSQGAYFS VKNSLQQYCT LESSLADGNY  60
AIYNSPSTVS FSPNGSPMSQ QDSHSYLPDQ HHSPDNAYGS PISGSCITDE MTDLKYKLKE  120
IESVMLGPDL SLLNNYDGAI LSGSSNNISH ESESWGQIME SISKRDVKQV LISCAKAVSD  180
NDLLMAQWLM DELRRIVSVS GEPIQRLGAY MLEGLVAKLA SSGSNIYKAL KCKEPASSEM  240
LSYMHILYEL CPYFKFGYMS ANGAIAEAMK DENRVHIIDF QIAQGSQWIT LIQAFAARPG  300
GPPHIRITGI DDTMSAYARG GGLEIVGRKL SKLAETFKVP FEFHAADMSG SEVQLEDLRI  360
QPGEALAVNF AFVLHHMADE SVSTQNHRDR LLRLVKSLSP KCVTLVEQES NTNTAAFFPR  420
FLETLNYYTA MFESIDVTLP RGHKERINVE QHCLAREVVN IIACEAAERV ERHELLGKWK  480
LRLKMAGFSP YPLSSLVNAT IKTLLENYCN KYKLEERDGA LYLGWMNRFL VTSSAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-641675374375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032068.10.0scarecrow-like transcription factor PAT1
RefseqXP_024032069.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLW9SM100.0W9SM10_9ROSA; Uncharacterized protein
STRINGXP_010112792.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]