PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010112531.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Nin-like

Protein Properties

Length: 961aa MW: 105464 Da PI: 5.4304

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010112531.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.1e-29	600	649	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki++ XP_010112531.1 600 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINK 649 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.209	582	672	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-26	602	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-23	854	945	No hit	No description
PROSITE profile	PS51745	21.035	861	943	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-24	861	943	No hit	No description
SMART	SM00666	2.7E-21	861	943	IPR000270	PB1 domain
Pfam	PF00564	5.3E-18	863	942	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MEHPFSSKEK EKESEYWPLS RAQVENFPSF DGGARSVVQE DVFTNFSDLL NFDSYAGWCN 60 SPAVTDQASA TYGLSSLPSV AYAALDAPNF IEQSVGALPG TEVGGNLGRS SFNFGDKIVF 120 QPADTQFEVS AHSNAANDSV AKQTNASVQG NSQIDAVNTY RPTRCSLDEK MLRALSVVKE 180 SSGGGILAQV WVPVKRGDQL FLSTSEQPYL LDHMLAGYRE VSRMYTFGAE GNSGRVLGLP 240 GRVFVSKVPE WTSNVCYYQK NEYLRSEHAF SHQVRGSMAL PVFEPDPTMP CCAVLELVTT 300 KEKSNFDKEM EIVCNALQAV NLRTNAHPRL VPQCLSNDQK DALAEIIDVL RAVCHAHRLP 360 LALTWIPCCY TEGADGEYVR VRVREGKLSA NEKCILCIEE TACYVNDRVM QGFAHSCMEH 420 HLEEGQGLAG KALQSNLPFF LPDVKTYDIN EFPLVHHARK FGLNAAVAIR LRSTYTGDCD 480 YILEFFLPVN MKGASEQQLL LNNLSGTMQR ICKNLRTVSD TEIVGAGSND AFQKDVVSNL 540 PSLSRESSQM VLSDSDLNSV DELPSKVSKR RNKGFEGDGV REQGMSGSRR QTEKKRSTSE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKG VEGGLKFDPT 660 TGGLVAAGSI AQEFDTRKGL FFTEKTQSLQ SSDPISAIKS EEDDCTGGAM VNPNSVEIRM 720 SNIDTQTNSA QESKVIAVDA GSERASYDTM SGPFLEKASF GFYHAKEVRT LNQRKINSKF 780 ENSDCHHVFR DSVCLDAGDE MDTVGDGANE LIEHNQPASS SMTDSSNGSG SMLHGSSSSS 840 QSFENPKHPK GKTSCVDSSS KIVVKATYKE DTVRFKFDAS AGCLQLYEEV AKRFKLQTGT 900 FQLKYLDDEE EWVMLVSDMD LQECLEILDD VGTRSVKFQV RDMPCAVGSS GSSNCFLAGG 960 S

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MEHPFSSKEK EKESEYWPLS RAQVENFPSF DGGARSVVQE DVFTNFSDLL NFDSYAGWCN  60
SPAVTDQASA TYGLSSLPSV AYAALDAPNF IEQSVGALPG TEVGGNLGRS SFNFGDKIVF  120
QPADTQFEVS AHSNAANDSV AKQTNASVQG NSQIDAVNTY RPTRCSLDEK MLRALSVVKE  180
SSGGGILAQV WVPVKRGDQL FLSTSEQPYL LDHMLAGYRE VSRMYTFGAE GNSGRVLGLP  240
GRVFVSKVPE WTSNVCYYQK NEYLRSEHAF SHQVRGSMAL PVFEPDPTMP CCAVLELVTT  300
KEKSNFDKEM EIVCNALQAV NLRTNAHPRL VPQCLSNDQK DALAEIIDVL RAVCHAHRLP  360
LALTWIPCCY TEGADGEYVR VRVREGKLSA NEKCILCIEE TACYVNDRVM QGFAHSCMEH  420
HLEEGQGLAG KALQSNLPFF LPDVKTYDIN EFPLVHHARK FGLNAAVAIR LRSTYTGDCD  480
YILEFFLPVN MKGASEQQLL LNNLSGTMQR ICKNLRTVSD TEIVGAGSND AFQKDVVSNL  540
PSLSRESSQM VLSDSDLNSV DELPSKVSKR RNKGFEGDGV REQGMSGSRR QTEKKRSTSE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKG VEGGLKFDPT  660
TGGLVAAGSI AQEFDTRKGL FFTEKTQSLQ SSDPISAIKS EEDDCTGGAM VNPNSVEIRM  720
SNIDTQTNSA QESKVIAVDA GSERASYDTM SGPFLEKASF GFYHAKEVRT LNQRKINSKF  780
ENSDCHHVFR DSVCLDAGDE MDTVGDGANE LIEHNQPASS SMTDSSNGSG SMLHGSSSSS  840
QSFENPKHPK GKTSCVDSSS KIVVKATYKE DTVRFKFDAS AGCLQLYEEV AKRFKLQTGT  900
FQLKYLDDEE EWVMLVSDMD LQECLEILDD VGTRSVKFQV RDMPCAVGSS GSSNCFLAGG  960
S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010112531.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056271	4e-45	KX056271.1 Citrus trifoliata transcription factor NLP8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031921.1	0.0	protein NLP8
Refseq	XP_024031922.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	W9SIY4	0.0	W9SIY4_9ROSA; Protein NLP8
STRING	XP_010112531.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	21390937

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]