PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112387.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 412aa    MW: 47076.8 Da    PI: 8.6168
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112387.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.5e-40107183278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC+adls++++yhrrh+vCe+hsk+p v+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  XP_010112387.1 107 CLVDGCKADLSSCRDYHRRHRVCEKHSKTPIVTVKGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKSQS 183
                     **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-32100168IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.428104181IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-37105186IPR004333Transcription factor, SBP-box
PfamPF031102.8E-30107180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEWDLKEFGW ESTDFDPRED ERLELDCDDN HHHDDPVLEF INSTRQKINT APADQSPEAL  60
RLKTSTTNMA DQYLADAAGS PEKQNDVVRG SDLMASKRRS GTQKMSCLVD GCKADLSSCR  120
DYHRRHRVCE KHSKTPIVTV KGEEKRFCQQ CSRFHSLGEF DEVKRSCRKR LDGHNRRRRK  180
SQSEPLYWSS KSFLSGYKGP RILHFGNPQI YATATVKGMW PMETKTGSES WTHTPHRRFQ  240
IINYQQNPPT PFNGGDKSLF FLQKTNDTKL GGNQTNPDEY LRHPLAPPGK GREKRDNYNP  300
KHKHKHKHMI MVSDEELSLP IDSGGRALYL LSTHPTHLIS SSNNNYNHLA QPHESCSFQL  360
LDNTKNAKNR PVDPPLPIYD AAANKQANML LRLGPDGLLE HGALQMLPIS LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-251071801184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112387.20.0squamosa promoter-binding-like protein 9
TrEMBLW9SKZ30.0W9SKZ3_9ROSA; Squamosa promoter-binding-like protein 16
STRINGXP_010112387.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-43SBP family protein