PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 280aa MW: 32087.4 Da PI: 9.7525 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.6e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+yss XP_010112258.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 88.5 | 1.3e-29 | 78 | 171 | 8 | 99 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +++ + +q+e+a L+++++ Lq+++R+l+Ge+L+ Ls+++Lq+Le+qLe slk +R+kK+++l+++i++l +k + +++en +L +k+e XP_010112258.1 78 QllNPASEVKFWQREAATLRQQLQYLQESHRQLMGEELSGLSVRDLQNLENQLEMSLKGVRTKKEQILTDEIKDLNRKGNLIHQENVELYTKVE 171 344677899********************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.44E-45 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 7.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.2E-28 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.709 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDYSSS 60 SMKTVIERYN KAKEEHNQLL NPASEVKFWQ REAATLRQQL QYLQESHRQL MGEELSGLSV 120 RDLQNLENQL EMSLKGVRTK KEQILTDEIK DLNRKGNLIH QENVELYTKV ELIHKENVEL 180 QRKAYETSDR NEENRSSNLT YSIGNGHDAR ASVNLQLSQP QPESQPQNNE TPAKAMKLGW 240 ASLENPMNKL SSNENPNLQP ALVFQLLKIK TIQGKSHHFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 7e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 7e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 7e-22 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112258.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031735.1 | 1e-174 | MADS-box transcription factor 23 | ||||
Swissprot | Q6EP49 | 1e-103 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | W9SKK1 | 0.0 | W9SKK1_9ROSA; MADS-box transcription factor 27 | ||||
STRING | XP_010112258.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-99 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397917 |
Publications ? help Back to Top | |||
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