PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112237.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 297aa    MW: 33342.1 Da    PI: 4.6552
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112237.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.25.2e-14118154135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_010112237.1 118 CQHCGISEkcTPAMRRGPGGPRSLCNACGLMWANKGT 154
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.8E-154991IPR010402CCT domain
PROSITE profilePS5101712.7194991IPR010402CCT domain
SMARTSM004012.0E-13112165IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-11116167No hitNo description
Gene3DG3DSA:3.30.50.102.9E-13116159IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.21E-13117160No hitNo description
PfamPF003205.6E-12118154IPR000679Zinc finger, GATA-type
PROSITE patternPS003440118145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MENPLQVQAV LLLLGGCDVP SSVPSSEFLP KQNNRGVDDP PWSSKLSRRF ASLVRFREKR  60
KERCYDKKIR YNCRKEVAQR MHRKNGQFAS SKDSRKIDAG NWDSSDGTPC AESIVRRCQH  120
CGISEKCTPA MRRGPGGPRS LCNACGLMWA NKGTLRDLTK AGRSITYDKN EAEISADIKP  180
SNMDPENCYH GQDEQGSPEE TKPGSLDSDN PSMRLSDQDM PDMQDIQDIQ EMQGTTDIIT  240
DHMSIQVENS SVELDEQETL DEFANASGTE FDIPENFDDQ ISIWFMLIDT GRSCVSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031736.10.0GATA transcription factor 24
SwissprotQ8GXL71e-53GAT24_ARATH; GATA transcription factor 24
TrEMBLW9SI340.0W9SI34_9ROSA; GATA transcription factor 24
STRINGXP_010112237.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-50ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]