PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GATA | ||||||||
Protein Properties | Length: 310aa MW: 33102.9 Da PI: 4.9142 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.1e-16 | 219 | 254 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp g++tLCnaCGl+++ kg XP_010112233.1 219 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 254 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.6E-12 | 79 | 114 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.911 | 79 | 114 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 82 | 113 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.096 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.8E-16 | 146 | 188 | IPR010402 | CCT domain |
SMART | SM00401 | 2.8E-12 | 213 | 266 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.064 | 213 | 261 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-11 | 216 | 262 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-15 | 217 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.06E-15 | 218 | 268 | No hit | No description |
Pfam | PF00320 | 1.1E-13 | 219 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MPEPNQQASM YGRAAMATTT NMQSGQVDDD DNDVTAGEES IDNPQIRFDD AAAAMNGIQD 60 VPSNALYVPG VADYAPVAEN GGSDQLTLSF QGEVYVFDAV SPDKVQAVLL LLGGYEIPSG 120 IPAMGATPIG QRGMNQFVAK PIQPQRAASL NRFREKRKER CFDKKIRYNV RKEVAMRMQR 180 KKGQFTSAKT SSEELGSASS VWNATPGSGQ DENMQETSCT HCGISSKSTP MMRRGPAGPR 240 TLCNACGLKW ANKGILRDLS KVLNGNVQDA SVKETEQSDG DANDSAAVTT TANIASSNGD 300 AKTAVTEMTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112233.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112233.1 | 0.0 | GATA transcription factor 28 | ||||
Swissprot | Q8H1G0 | 1e-76 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | W9SKI1 | 0.0 | W9SKI1_9ROSA; GATA transcription factor 28 | ||||
STRING | XP_010112233.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-79 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397892 |