PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111971.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family E2F/DP
Protein Properties Length: 381aa    MW: 42699.7 Da    PI: 9.5379
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111971.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.64.5e-232186171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll+++fl+l+++   + + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  XP_010111971.1 21 RKQKSLGLLCSNFLSLYNRDGITSIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYSWKG 86
                    79*****************999************...**..****************************98 PP
2E2F_TDP72.93.4e-23150230171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL lltq+f+kl+ ++++  ++l+e++k L+ +      +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  XP_010111971.1 150 RREKSLALLTQNFVKLFVCTNACLISLDEASKLLLGDahnlsVMRTKVRRLYDIANVLSSMNLIEKthtvdTRKPAFRWLG 230
                     689**************************************999***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-261788IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-162084IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-272186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.5E-202286IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-21146231IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-29150230IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.48E-12152231IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.4E-18152230IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAARSPASTV PESSKHHAYS RKQKSLGLLC SNFLSLYNRD GITSIGLDDA ASRLGVERRR  60
IYDIVNVLES VGVLARKAKN QYSWKGFEAI PKALQELKAD GWKDNCNSFD GNEYSKVSDD  120
EDDDTNGSQN DKSNPGLNPK SSASSKTEHR REKSLALLTQ NFVKLFVCTN ACLISLDEAS  180
KLLLGDAHNL SVMRTKVRRL YDIANVLSSM NLIEKTHTVD TRKPAFRWLG YGESTENCGS  240
AHNSLTTESR KRAFGTDVTN INFKRSKVDS SIGGTLNSNF NKQKQVKYES FVHEVDRSNV  300
EEDPKDGSKS YQFGPFSPVT VARVGASEHS NPRRFHDWES LASAYQPQYQ NQALKDLFSH  360
YMEAWKSWYS KVAGKKPIKI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-39202223228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111971.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-141E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLW9SXR30.0W9SXR3_9ROSA; E2F transcription factor-like E2FE
STRINGXP_010111971.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-144DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]