PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111957.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27848.3 Da    PI: 7.0803
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111957.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rienk+nrqv+fskRrng+lKKA+ELSvLCda v +iifss+gklye+ 
  XP_010111957.1  9 ERIENKINRQVSFSKRRNGLLKKAYELSVLCDAGVGLIIFSSRGKLYEFG 58
                    69**********************************************95 PP
2K-box69.97.9e-2476165392
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                     ++++++    +a+ l +e+ kLk ++e+Lqr  Rh+lGe+Le+L+l++Lq+Le+qL++ l++ R++Kn++l e +eel+kk +e +e++ 
  XP_010111957.1  76 SQDSNNIVGDEAQDLIREIPKLKLRYETLQRAERHYLGENLEELNLRDLQNLEKQLDRTLSQTRQRKNDMLAERMEELRKKLEEEEERKA 165
                     4555666777899********************************************************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006161IPR002100Transcription factor, MADS-box
CDDcd002657.58E-41278No hitNo description
SuperFamilySSF554551.06E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.9E-1886162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.61187175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVS FSKRRNGLLK KAYELSVLCD AGVGLIIFSS RGKLYEFGST  60
DLDMILERYR QFSYSSQDSN NIVGDEAQDL IREIPKLKLR YETLQRAERH YLGENLEELN  120
LRDLQNLEKQ LDRTLSQTRQ RKNDMLAERM EELRKKLEEE EERKARSNME DQGDLNIVLS  180
GSGNKGFKLH STQPNGHVES QLVIDQGYYR SMIQENAIDH HEARTMASGI NSRNQDWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-23183183MEF2 CHIMERA
6bz1_B2e-23183183MEF2 CHIMERA
6bz1_C2e-23183183MEF2 CHIMERA
6bz1_D2e-23183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061521e-146KJ506152.1 Ficus carica MADS-box protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031529.11e-170MADS-box transcription factor 17 isoform X2
SwissprotQ8LLR18e-70MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLW9SHF01e-172W9SHF0_9ROSA; MADS-box transcription factor 6
STRINGXP_010111957.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-54AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]