PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111324.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 425aa    MW: 48915.8 Da    PI: 9.8895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111324.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-10301091499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + l++p k a ++g++   s   tl  ++grsW+v+l  +k +++++l +G +eFv+   ++    + F+++++s f  +v ++++
  XP_010111324.1  30 HELMIPVKSAMKFGKD--LSEVATLIVPNGRSWQVRL--KKDGKKIWLHEGLQEFVEYYSVQYFYNLHFRYERNSVF--YVCICDA 109
                     679*******999966..8889***************..999999**************************999999..****997 PP
2B346.66.4e-15312399590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      ++s++l ++ + +p +f+++h ++  +s +++l+  +g r+W  ++ y+ k+g       ++kGW  F  +n+L+egD++vF+l+++ ++
  XP_010111324.1 312 ILRSYNLCHSYVNMPEEFVRRHLNQ--CSEDIQLQANNGrRKWPARCYYQVKDGLitsvKKIGKGWGPFSADNNLQEGDVCVFELTKK-GK 399
                     4589999***************766..8899*****98889******8877776544445567*********************9875.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1612111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1713110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-1316108No hitNo description
PROSITE profilePS508638.9117110IPR003340B3 DNA binding domain
SMARTSM010191.8E-718110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-19303406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-17304409IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-15307409No hitNo description
PROSITE profilePS5086311.801308412IPR003340B3 DNA binding domain
SMARTSM010195.4E-6309412IPR003340B3 DNA binding domain
PfamPF023622.8E-12312400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPRKRRNSHS LATPMPHFSA IMLQFPIPGH ELMIPVKSAM KFGKDLSEVA TLIVPNGRSW  60
QVRLKKDGKK IWLHEGLQEF VEYYSVQYFY NLHFRYERNS VFYVCICDAS GSEIDYPCDS  120
PNRGHVVPDF RKHHEEHIGG DDSVEILDTK PSISLGLRVK DGDEDKKDVE VVEILDIKPF  180
ASNGGAEQDY SRKNHIRLFQ QKIGRHTSRC QSHTSKDPPT SGVAYWTSRS CRKEKQADLK  240
EPANDNVPGR GQAKEKKRSH ARAFPAKEDV EMLFPRSFSY TKSRRLMNSK ETERAVRAAS  300
VCKLKNPSFM VILRSYNLCH SYVNMPEEFV RRHLNQCSED IQLQANNGRR KWPARCYYQV  360
KDGLITSVKK IGKGWGPFSA DNNLQEGDVC VFELTKKGKD VNVLRVWIYH AADYARSAQK  420
RFKAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1627941519146B3 domain-containing transcription factor VRN1
4i1k_B5e-1627941519146B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259KKRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111324.10.0B3 domain-containing transcription factor VRN1
TrEMBLW9SW630.0W9SW63_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010111324.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein