PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010111248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28524.8 Da PI: 10.545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.5e-11 | 134 | 206 | 7 | 78 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegD 78 p +++s+ +lp kfa++h +k e+ + +l+ ++gr W+v +++r + ++ + +GW+ Fv++n L+++D XP_010111248.1 134 PRGSFSSKGCTLPYKFAKTHINKIEG--DAILKFSDGRYWSVLYKVRDRLNGspvAKFCRGWSAFVRDNALEQRD 206 6667888899**********544334..79999999********9944444445567779************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.61E-6 | 51 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.79E-7 | 52 | 125 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-7 | 52 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.893 | 64 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.995 | 128 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-9 | 134 | 206 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.12E-10 | 137 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-11 | 137 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-8 | 144 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTGQFRTARH CSKRWRNICQ KKCGDVTKKA LSAKEKAQAL ERASDFKSKY PFLKKYVENK 60 HADVILKALD GRTWFVNYTF GVKEKTPNAK FLNGWKSFAV DKSIDILFEV YIFRENGDST 120 TLQVHKTATS KVRPRGSFSS KGCTLPYKFA KTHINKIEGD AILKFSDGRY WSVLYKVRDR 180 LNGSPVAKFC RGWSAFVRDN ALEQRDESSV SEDQKRILEV TSIRGLHPLM LAELLKQPAN 240 SSQQVPIFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010111248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9S7J0 | 0.0 | W9S7J0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010111248.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14300 | 4 | 16 |
Link Out ? help Back to Top | |
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Entrez Gene | 21410506 |