PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111169.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 352aa    MW: 40064.6 Da    PI: 7.5482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111169.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.2e-34742141128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+Ptd+e++ e+L++k+ +++      ++++  +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + 
  XP_010111169.1  74 LPAGVKFDPTDQEIL-EHLEAKILSDSrklhplIDEFIqTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVNtdedgsET 166
                     799***********9.99****999986665442222213443336**********.555666777******************74445655578 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_010111169.1 167 RWHKTGKTRPVFV-NGGVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 214
                     8************.8999**********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3868233IPR003441NAC domain
PROSITE profilePS5100533.6474233IPR003441NAC domain
PfamPF023653.3E-1575214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTAWCNESDE ERAINQLISP NDATVSRSLS INTTTKTITS TTTCADELRT ITCPSCGHHI  60
QFQDQPGIHD LPGLPAGVKF DPTDQEILEH LEAKILSDSR KLHPLIDEFI QTLEGENGIC  120
YTHPEKLPGV SKDGQIRHFF HRPSKAYTTG TRKRRKVNTD EDGSETRWHK TGKTRPVFVN  180
GGVKGFKKIL VLYTNYGRQR KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCG  240
SSTIKDHVVS FDTNINIRSG LIHDHHNITS PLAKKAALHH HHHHHVEYNY NPNSFIDYHD  300
HHHHHHHHEE GSHNNGESPP QLIPNLVVQG DGSSFIHRLT AEASKGKLER KM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111169.10.0NAC domain-containing protein 73
RefseqXP_024031061.10.0NAC domain-containing protein 73
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLW9SVR40.0W9SVR4_9ROSA; NAC domain-containing protein 8
STRINGXP_010111169.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]