PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110817.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 772aa    MW: 83839.9 Da    PI: 6.1374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110817.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.54.7e-963967703374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.....svselykalppsetseknsseelaalklfsevsPil 91 
                     ++++++Ae + +g+++ aq +Larl+++ +sp g+p++R+a+yf+eAL+   ++     +++++    pp+  ++ +++ ++ a+klfse+sP++
  XP_010110817.1 396 DQVYKAAELIGTGNFSHAQGILARLNHHlSSPFGKPLHRAAFYFKEALQLLFNNnninnNSNNTIFPPPPRCPTPFDVIFKMGAYKLFSEISPLI 490
                     7899**********************999*******************98776632100333333333555556666****************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     +f ++t Nqa+lea++ + ++Hi+Dfdi+ G+QW++++q+L+        + +psl+iT+++sp++++  el  ++++La+fA+e+gv f+ +v+
  XP_010110817.1 491 QFLNFTSNQALLEALSDSATIHIVDFDIGFGAQWASFMQELNRGVgggggSATPSLKITAFASPSTHHPVELALMRDNLAQFAAEIGVAFDLEVV 585
                     ******************************************88855544449****************************************** PP

            GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                       ++le+ ++++  ++  gE++aVn+ +      +++++l++    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a +
  XP_010110817.1 586 NFDSLEQTSYSMPVFRAeGEVIAVNFPI--WAASNQPAALPN----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHILQALHSYINLLESLDAAV 674
                     999*****9999888878*********9..455567899998....************************************************* PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +s++ +k+E++ll+++i++ v  + +       ++  W+  + +aGF pv++s++a++qa+++++++  +g++ve++++sl+l+W++r+Lvsv
  XP_010110817.1 675 NVTSDAVNKIEKFLLQPKIESTVLGRLRG--PVPDKMPLWKTLFASAGFAPVTFSNFAETQAECVVKRTV-RGFHVEKRQASLTLCWQRRELVSV 766
                     ***********************976655..889999******************************998.************************ PP

            GRAS 371 SaWr 374
                     SaWr
  XP_010110817.1 767 SAWR 770
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.79368751IPR005202Transcription factor GRAS
PfamPF035141.6E-93396770IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MRGMPFQFEQ KGLFEIAQGG VFWNNINNKY WSKEEQEELL LYSFANNINN EPTSVLHMRR  60
SPSPPTSAST LSSSFGGGGD TVGGGGGVAT VLHPETPAGP TTTTKDEWAS ELQPIPERCG  120
GLVVGGGGME DWETMLSETT AVAAASPGGP QDHSLLRWIA GDVVVDDPSF GLKQLLQTGN  180
INNNNSPLDF DGNAGFGVVD FDPSLGYSGS GFVNSSNNNS GNGGGKINVG SSIAPPTSSS  240
GPLNYKVATT TVGFTNNNCN IGQNPILSNG LPLPPGMIYP PQSLDEKPQI LNPQMLGQNP  300
SFLLPLIEQP PQQKRHNSGG VIMAAVDPPP APASQIPKVP FCDPGHEFLM MRKQQQQQQH  360
QHLGNSFVPQ GMMMMQFLPK QELQQQQQQQ QHALLDQVYK AAELIGTGNF SHAQGILARL  420
NHHLSSPFGK PLHRAAFYFK EALQLLFNNN NINNNSNNTI FPPPPRCPTP FDVIFKMGAY  480
KLFSEISPLI QFLNFTSNQA LLEALSDSAT IHIVDFDIGF GAQWASFMQE LNRGVGGGGG  540
SATPSLKITA FASPSTHHPV ELALMRDNLA QFAAEIGVAF DLEVVNFDSL EQTSYSMPVF  600
RAEGEVIAVN FPIWAASNQP AALPNLLRFI KQLSPKIVVS LDRGCDRSDL PFPQHILQAL  660
HSYINLLESL DAAVNVTSDA VNKIEKFLLQ PKIESTVLGR LRGPVPDKMP LWKTLFASAG  720
FAPVTFSNFA ETQAECVVKR TVRGFHVEKR QASLTLCWQR RELVSVSAWR CC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-273797692377Protein SCARECROW
5b3h_D2e-273797692377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110817.10.0scarecrow-like protein 27
TrEMBLW9SUY60.0W9SUY6_9ROSA; Uncharacterized protein
STRINGXP_010110817.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-114GRAS family protein