PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010110805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | WOX | ||||||||
Protein Properties | Length: 252aa MW: 28431.9 Da PI: 9.8291 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.8e-21 | 104 | 163 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le+l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_010110805.1 104 TRWNPTQEQIGILETLYRGgMRTPNAQQIEQITAQLskfgKIEGKNVFYWFQNHKARERQ 163 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118.1 | 3.8e-38 | 104 | 165 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L+++Gkie+kNVfyWFQN+kaRerqkq XP_010110805.1 104 TRWNPTQEQIGILETLYRGGMRTPNAQQIEQITAQLSKFGKIEGKNVFYWFQNHKARERQKQ 165 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-13 | 97 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.301 | 99 | 164 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-6 | 101 | 168 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.89E-5 | 104 | 165 | No hit | No description |
Pfam | PF00046 | 3.7E-19 | 104 | 163 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-8 | 105 | 163 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGSCSSMKVH QFARGLWEAH EPSLTLGCKR LRPLAPKLPN SPTSSTTLDT HNITTTAIST 60 SPNSSIAPFD LKSFIRPESG PRKTGSSDVD KKDSPPVETH PGGTRWNPTQ EQIGILETLY 120 RGGMRTPNAQ QIEQITAQLS KFGKIEGKNV FYWFQNHKAR ERQKQKRNSL GLSHSPRTPT 180 PITIANLDIS RGDVERDRED STSPYKRKCR SWGFECLMVE DHSSTRSLYN NNYRPEEGDR 240 TLELFPLHPE GR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010110805.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110805.1 | 0.0 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 1e-74 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | W9S690 | 0.0 | W9S690_9ROSA; WUSCHEL-related homeobox 4 | ||||
STRING | XP_010110805.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 6e-77 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385828 |