PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110801.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

TCP

Protein Properties

Length: 532aa MW: 59555.4 Da PI: 8.6303

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110801.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114	1.9e-35	178	335	3	133
TCP 3 gkkdrhskihT.kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssss 81 ++kdrhskihT +R RR+Rls+++a++fFdLq+ LGf ++skt+eWLl++a +ik+l ++ ss+++++c XP_010110801.1 178 KRKDRHSKIHTgTTRPRHRRMRLSIDVAREFFDLQELLGFERASKTVEWLLRKARSEIKKLKDSnneggssstcpemqtSSPNSESC-------- 264 79*******4468*********************************************76544433333333211112222........ PP TCP 82 asnsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + k+ +k ++s+++ + + lake r+kar+rarertrekm+++ XP_010110801.1 265 ------EgasgldevgingedqgvagtssskpPLVKERKKYSRSNSKRIAINPLAKELREKARERARERTREKMSKR 335 ......12344455555566666777766655333444456666666667799999****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.0E-35	178	334	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.706	179	238	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.48	314	331	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MFNLPPNSWN VNNNDPINSF SHDQYYSHNF QKPFPNQQEY QYNYTLNSKQ EVSHHLDHPQ 60 YHSCTDQPLS FPNGYTSPFE DQNLLPQNSH GINVSQQFYY SQPSFVKESA EKTSDVLLPS 120 ETFTPTITGS KLVKLDSDRS GEDLSKSVAP THQYDQPQIL RKRSGGGCGD SGNNKSKKRK 180 DRHSKIHTGT TRPRHRRMRL SIDVAREFFD LQELLGFERA SKTVEWLLRK ARSEIKKLKD 240 SNNEGGSSST CPEMQTSSPN SESCEGASGL DEVGINGEDQ GVAGTSSSKP PLVKERKKYS 300 RSNSKRIAIN PLAKELREKA RERARERTRE KMSKRVERVE PAIQNHRGSS GGGGGGGSRT 360 NIANHNKDHD DHGLNINQPA SNKSEEKQQM GDQLPNQNID MNNNIVTPNS SLGAVMQVSR 420 YDQRYEFSQE ILPISNPNGW NIVQVSNHDH ILQTSTTSTS TTAPIVDYET YSYLVNHLEK 480 WNNSLVANSV SNFGTTSGAT GFGVPQQTSS IFNGTINIMV TSEWCNGNVR LK

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MFNLPPNSWN VNNNDPINSF SHDQYYSHNF QKPFPNQQEY QYNYTLNSKQ EVSHHLDHPQ  60
YHSCTDQPLS FPNGYTSPFE DQNLLPQNSH GINVSQQFYY SQPSFVKESA EKTSDVLLPS  120
ETFTPTITGS KLVKLDSDRS GEDLSKSVAP THQYDQPQIL RKRSGGGCGD SGNNKSKKRK  180
DRHSKIHTGT TRPRHRRMRL SIDVAREFFD LQELLGFERA SKTVEWLLRK ARSEIKKLKD  240
SNNEGGSSST CPEMQTSSPN SESCEGASGL DEVGINGEDQ GVAGTSSSKP PLVKERKKYS  300
RSNSKRIAIN PLAKELREKA RERARERTRE KMSKRVERVE PAIQNHRGSS GGGGGGGSRT  360
NIANHNKDHD DHGLNINQPA SNKSEEKQQM GDQLPNQNID MNNNIVTPNS SLGAVMQVSR  420
YDQRYEFSQE ILPISNPNGW NIVQVSNHDH ILQTSTTSTS TTAPIVDYET YSYLVNHLEK  480
WNNSLVANSV SNFGTTSGAT GFGVPQQTSS IFNGTINIMV TSEWCNGNVR LK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	179	RKRSGGGCGDSGNNKSKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110801.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010109345.1	0.0	transcription factor TB1
TrEMBL	W9S6C5	0.0	W9S6C5_9ROSA; Uncharacterized protein
STRING	XP_010110801.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-20	TCP domain protein 12

Link Out ? help Back to Top
Entrez Gene	21405121