PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110369.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family RAV
Protein Properties Length: 396aa    MW: 45259.3 Da    PI: 7.9971
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110369.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-0757951255
             AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +g W A+I+       + +r++lg+f + +eAa  ++ a+ +l+ 
  XP_010110369.1 57 NGHWGAQIYA------NhQRIWLGTFKSDKEAAMSYDSAAIRLRS 95
                    678****999......44************************986 PP
2B394.47.9e-30170269195
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     f+k+ltpsdv+k++rlv+pkk+a ++      g  + ++++l + d++ rsW+++++y+++s+++v+t+GW++Fvk+++L+e+D+++F+l +  +
  XP_010110369.1 170 FQKELTPSDVSKLNRLVIPKKYAVKYfprieeG--SDNDVELEFHDRTMRSWKFRYCYWRSSQSFVFTRGWNRFVKEKQLRENDTITFYLCEYcQ 262
                     99*************************999633..45889*************************************************987666 PP

                     EE..EEE CS
              B3  89 efelvvk 95 
                     e+e  v+
  XP_010110369.1 263 EGERAVR 269
                     6665655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.1248103IPR001471AP2/ERF domain
CDDcd000182.22E-2048105No hitNo description
SuperFamilySSF541711.18E-1248104IPR016177DNA-binding domain
SMARTSM003806.4E-1648109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1448103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-33168259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-27169260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-26169257No hitNo description
PfamPF023621.2E-26170269IPR003340B3 DNA binding domain
SMARTSM010191.2E-23170274IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874170274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEEDMSRTVS NGGGNATPEA IDSNSCAHLL PPPNKPARRG GFRTSPLKFK GLVPQQNGHW  60
GAQIYANHQR IWLGTFKSDK EAAMSYDSAA IRLRSADSHR NFPWTSATLE EPKFQEAYTT  120
DALLGMIKDG SYPSKFVEYL MARYENLGRD IGRLDLSMVQ TKGLVFKQLF QKELTPSDVS  180
KLNRLVIPKK YAVKYFPRIE EGSDNDVELE FHDRTMRSWK FRYCYWRSSQ SFVFTRGWNR  240
FVKEKQLREN DTITFYLCEY CQEGERAVRT FTAIDVFKVE NINGGLVEEN NDKKQNLGLH  300
LDLNLGMHDH HKDGIEVEGE KEVAVKAKPI IPKAGNSDLM KEKDLKRIAC NCGVEKVKPT  360
AKAEENEGCG TYQENIGIGK SQQCLVEFLS KYFLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-27167258596B3 domain-containing transcription factor NGA1
5os9_B8e-27167258596B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030541.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P52e-93RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLW9STT40.0W9STT4_9ROSA; AP2/ERF and B3 domain-containing transcription factor
STRINGXP_010110369.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-95RAV family protein