PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110036.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 437aa MW: 47742.9 Da PI: 7.1128

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110036.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00014	324	360	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010110036.1 324 EKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 360 677899******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.017	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-11	320	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-5	322	364	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.0E-9	324	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MESANLQLPD QLVGSPAPLA APSCYGFGSN LANWSSSTPT TTFSNVTNVG DYSNSNSDGI 60 VSNSPTRQIS TTDHHHHHHN ILVSDHHIPR NTSTTTSNLI QDLGFPWSST SHQFAAYNDQ 120 LAKIKEEFSE MSFPKFTEML NSPFNSTDAD YGNSLLTTHM IKNQHNKDNI FRDLSCSSNS 180 TSTPTNRQNP LVKTLSSSCQ INAPEFDHSN DHTTNSTNIG HRQSSSSTFG KEGLAVGCRG 240 QFSQIYPSVN ISNLSTQHSL MGMNMINLKP GINLDHLAAS ARFCNNTDMT STTTFGQPLS 300 NFGVDSIQQQ QRTSYGLSKA VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ 360 NQVETLSVPY MKSSRNKSCK TVQGGLKDHQ DDNEETKRDL KSRGLCLVPL SCMSYVTGDG 420 GGESIWPPVP NFGGRIT

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MESANLQLPD QLVGSPAPLA APSCYGFGSN LANWSSSTPT TTFSNVTNVG DYSNSNSDGI  60
VSNSPTRQIS TTDHHHHHHN ILVSDHHIPR NTSTTTSNLI QDLGFPWSST SHQFAAYNDQ  120
LAKIKEEFSE MSFPKFTEML NSPFNSTDAD YGNSLLTTHM IKNQHNKDNI FRDLSCSSNS  180
TSTPTNRQNP LVKTLSSSCQ INAPEFDHSN DHTTNSTNIG HRQSSSSTFG KEGLAVGCRG  240
QFSQIYPSVN ISNLSTQHSL MGMNMINLKP GINLDHLAAS ARFCNNTDMT STTTFGQPLS  300
NFGVDSIQQQ QRTSYGLSKA VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ  360
NQVETLSVPY MKSSRNKSCK TVQGGLKDHQ DDNEETKRDL KSRGLCLVPL SCMSYVTGDG  420
GGESIWPPVP NFGGRIT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110036.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030303.1	0.0	transcription factor bHLH110
TrEMBL	W9SSZ3	0.0	W9SSZ3_9ROSA; Uncharacterized protein
STRING	XP_010110036.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-48	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21404763