PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110017.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 578aa    MW: 64577.9 Da    PI: 6.2389
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110017.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103644011954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+++e++ LAk++gLt +qV +WF N R +
  XP_010110017.1 364 FEHflHPYPKESEKAMLAKQTGLTPKQVANWFINARVR 401
                     665559******************************88 PP
2BELL113.51.2e-36227298172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erq+lq+kk+kL+s+l+++dkrYkqy++q+q+v+s F+  ag g+a+ Yt+lA k+iSrhFrcL+dai+eqi
  XP_010110017.1 227 ERQDLQNKKTKLMSMLDQIDKRYKQYYQQMQIVVSFFDNLAGRGAAEAYTALARKTISRHFRCLRDAISEQI 298
                     799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.9E-53154296IPR006563POX domain
PfamPF075261.0E-45160295IPR006563POX domain
PROSITE profilePS5007112.6342405IPR001356Homeobox domain
CDDcd000861.15E-12345406No hitNo description
SMARTSM003896.5E-10345409IPR001356Homeobox domain
SuperFamilySSF466899.84E-18346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28348411IPR009057Homeodomain-like
PfamPF059205.9E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MATYLPNLSN KKCDPSSQYM DDPFVTCPSE PSLRGGGGNE MMYLNSHQAA MILPGTNCLN  60
SNCVDSVESR NEMMFIPPIE QNVHYQGQGL SLSLGKEFQY HYSSNPSLSS DHMGTCVSSL  120
GSNNESVECF SMASGFCGGK KTEDLGNPNG GFGYRFGNNV LNSKYLKAAQ GLLDEVVNVR  180
KALKHKLQGN IGSSDGLKEN DDGKANDPSS DPSETSANPP CEISLTERQD LQNKKTKLMS  240
MLDQIDKRYK QYYQQMQIVV SFFDNLAGRG AAEAYTALAR KTISRHFRCL RDAISEQIQA  300
IQRRLGEQDH STNSQPSAIP RLRYVDMKLR QERGINQLSA MRHAWRPQRG LPESSVTILR  360
AWLFEHFLHP YPKESEKAML AKQTGLTPKQ VANWFINARV RLWKPMVEEM YKEEFNDLEN  420
NPNSSPENPH MIKINKETHG ILDDSSSPYY SDNTRTRKEE IEKIRRSSSS SLCEEYMSNI  480
TESDNAAHNV FMGDEALRTN DQNSTSYGVA EEDLGGIVVR DSRHVSLALE LRHCESDGFS  540
TLGGGPHNDS ASDSAAASAS LDYQSRFSNP HLLHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-17351409563Homeobox protein Meis2
4xrm_B2e-17351409563Homeobox protein Meis2
4xrs_A1e-17351408158Homeobox protein Meis1
4xrs_B1e-17351408158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110017.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-107BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLW9SC030.0W9SC03_9ROSA; BEL1-like homeodomain protein 6
STRINGXP_010110017.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-106BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]