PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27577.1 Da PI: 7.0452 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+ rqvtf+kRr+g+lKK +ELSvLCda++ +iifss+gk+yey+s XP_010109853.1 9 SRIENKTTRQVTFAKRRAGLLKKTHELSVLCDAQIGLIIFSSNGKMYEYCS 59 59***********************************************96 PP | |||||||
2 | K-box | 53.1 | 1.4e-18 | 74 | 162 | 3 | 90 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 ++g++ e++++e+l+ el+++k ++nLq ++ ++ GedL+s s++eL Le+ Le+s+ k+R++K ell +q+++lq+ ke++ + XP_010109853.1 74 LATGTRiEEHNESEQLHGELRRIKTDTHNLQLSLQRYTGEDLSSVSMEELDGLEHMLEHSVHKVRTRKIELLQQQMQNLQRTIKEHEAA 162 556667677889999*****************************************************************988887654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.543 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.89E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-30 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-16 | 81 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.835 | 86 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGKITISR IENKTTRQVT FAKRRAGLLK KTHELSVLCD AQIGLIIFSS NGKMYEYCSA 60 EASSMENIIK RYQLATGTRI EEHNESEQLH GELRRIKTDT HNLQLSLQRY TGEDLSSVSM 120 EELDGLEHML EHSVHKVRTR KIELLQQQMQ NLQRTIKEHE AAAALAAEHH HHQAQMTMVA 180 KAEEENRNAN HVNVLNQFPF DGEEQPSSVL QLATLQAAPG SHNFYPCRLL PTQPNLQDYS 240 LN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 72 | 1 | 69 | MEF2C |
5f28_B | 4e-19 | 1 | 72 | 1 | 69 | MEF2C |
5f28_C | 4e-19 | 1 | 72 | 1 | 69 | MEF2C |
5f28_D | 4e-19 | 1 | 72 | 1 | 69 | MEF2C |
6byy_A | 4e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 5e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 5e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 5e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 5e-19 | 1 | 72 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030137.1 | 1e-151 | MADS-box protein defh21 | ||||
Swissprot | Q9ATE5 | 3e-69 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | W9SE52 | 1e-179 | W9SE52_9ROSA; MADS-box protein FBP24 | ||||
STRING | XP_010109853.1 | 1e-180 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-55 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21401479 |
Publications ? help Back to Top | |||
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