PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109656.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 857aa    MW: 94440.8 Da    PI: 7.0727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109656.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16280375598
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l ++
  XP_010109656.1 280 LSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMG 372
                     7899********************555566778***************9989999999***9.********************876.77777777 PP

                     EE- CS
              B3  96 vfr 98 
                     +++
  XP_010109656.1 373 FRK 375
                     766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-27268379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-17275375IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644276377IPR003340B3 DNA binding domain
SMARTSM010199.2E-18276377IPR003340B3 DNA binding domain
PfamPF023623.0E-14280375IPR003340B3 DNA binding domain
CDDcd100172.36E-19280375No hitNo description
PROSITE profilePS5105014.59541591IPR011124Zinc finger, CW-type
PfamPF074963.0E-12546588IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MACMNASCGA STSIEWKKGW ALRSGGYANL CDKCGSAYEQ SVFCDVFHST ESGWRDCTSC  60
GKRLHCGCIA SRFLLELLDS GGVKCISCTK KSGSHPNISD DKPNGLGTST VSELQRTSSN  120
DQLDGNGVDK MKLLQLSNGT EAIGLRHLLQ SPNEDTNGLF RKMKQEDVPP SLGEIGNPYF  180
SNLNHGSNGS SEAAKAEFRR ANTGSNDIYE ALPHTNLTMT IGAPLGHSNT FPSAIVDERE  240
SKTSSLFLQG TRSRHLLPKP PRSNLATSLE ANTSMVSQML SASDAGRIGR LVLPKACAEA  300
YFPPISQPEG LPLKIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  360
SRMDPEGKLI MGFRKASNSV AMQDTHPSAI HNGAHTSETF FSGVFENLPV ISGYSGLLQS  420
LKGSTDSHLN ALSKHLSSTS ADFSWHKIEK QEGRTKEGLL LPSMLVPERK KARNIGSKSK  480
RLHIDSQDAL ELKLTWEEAQ DLLRPPPAVK PSTVVIEDHE FEEYEEPPVF GKRSIFIARS  540
TGEQEQWAQC DSCSKWRRLP VDVLLPYKWT CADNSWDQSR SSCSAPDELN TRELENLLRL  600
NKEFKKRKIA SHHRPTQEKE SSGLDALVNA AILGDNAADA GTTSVATTTK HPRHRPGCSC  660
IVCIQPPSGK GKHKPSCTCN VCNTVKRRFK TLMMNKKKRQ SEREAEISNR NQKTWGPRDE  720
AEVDSTSRHV SSQLDPSDNE ARSANELESK SQGAETMKET LDLNCDPRRE EDLRAVSSRV  780
SMVSLLQVAN RPLETYLKQN GLTSLVHEQQ TSSASPVPPQ VTNESEGQLN EDVSALQEQE  840
SEGGDQCRPD QSQNDPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-5827538323131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030048.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLW9SRZ60.0W9SRZ6_9ROSA; B3 domain-containing protein
STRINGXP_010109656.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  5. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]