PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109417.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family AP2
Protein Properties Length: 718aa    MW: 79129.2 Da    PI: 7.2057
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109417.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.7e-12344400155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  XP_010109417.1 344 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 400
                     789******************77776664346655.77******************98 PP
2AP245.51.9e-14445494355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010109417.1 445 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 494
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-18344408No hitNo description
SuperFamilySSF541716.54E-14344410IPR016177DNA-binding domain
SMARTSM003802.0E-21345414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-12345409IPR001471AP2/ERF domain
PfamPF008473.0E-9345400IPR001471AP2/ERF domain
PROSITE profilePS5103216.937345408IPR001471AP2/ERF domain
PRINTSPR003672.0E-5346357IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-17443503IPR016177DNA-binding domain
CDDcd000181.61E-24443504No hitNo description
SMARTSM003802.2E-33444508IPR001471AP2/ERF domain
PROSITE profilePS5103219.309444502IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-18444502IPR001471AP2/ERF domain
PfamPF008473.2E-9445494IPR001471AP2/ERF domain
PRINTSPR003672.0E-5484504IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MKQQAMNDQN NSNNNWLGFS LSPQMKMELS STSSDLHHNP YRHQVQSTST TTTTPSSSAV  60
PTSFYLSPSQ LTNWVGETAG FHSPLSVMPL KSDGSLCIME ALSRSQPEGM VPSSSPKLED  120
FLGGASMGAH DQYGSQEREA MALSLDSIYY NNNNHNAADH HHHHHHQSAQ ETNRDNNPHP  180
LDLLQHPFRP NQQQQYYSGI PCHGIYQTQL GEVSGKDMHT IGECDPEISS NWVAAAAAAA  240
RQYSGHHSLE QQQMNGSTNV VEENNSGGVS GPVGGGIGCG ELQSLTLSMS PGSQSSCITA  300
PRQISPTGTE CMAMETKKRG PGKVTQKQTP VHRKSIDTFG QRTSQFRGVT RHRWTGRYEA  360
HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQTELEDMK  420
KMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  480
AAEAYDIAAI KFRGVNAVTN FEITRYDVEK IMASNTLLAG ELARRNKETE PSTDHNHHHH  540
HQHQHQHQAV DYNPSSQMNG EINDNPESNS LGNGTGPDWK MALYQSQNPC LDSLDQKSIS  600
SGSYRNASFS MSLQDLIGID SVSSGAQQPL VEHQESAKLG ASTHFSNPSS LVTSLSSSRE  660
GSPDKTGPTN AMLFARPPLA SKFINPTSGV SSWFPSQLRP PTAISMGHLP VFAAWNDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109417.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029912.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLW9S2G40.0W9S2G4_9ROSA; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_010109417.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-130AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]