PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | G2-like | ||||||||
Protein Properties | Length: 377aa MW: 41661 Da PI: 8.3328 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.2 | 6.9e-32 | 206 | 261 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_010109406.1 206 KQRRNWSPELHKRFLNALQQLGGSHTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 261 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 203 | 264 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.926 | 203 | 263 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.07E-18 | 204 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-27 | 206 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-8 | 208 | 259 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDFSEKMNYS GLGFREYVET LEEERKKIQV FQKELPYCLE LVTQTIERCK QQLSGTATTT 60 ECLHGQSECS EQTSSEGRVF EEFLPLKRTS SDNEDDEDEE QQSPKRKTSI NNDNMADNKK 120 KADWLRSVQL WNNPTPDPAP QKEDVPKKAS VMEVKRNGGA FQPFQREKNV GKRNGSPAPA 180 PASAPAASSS SGKRDDETEG QQSQRKQRRN WSPELHKRFL NALQQLGGSH TATPKQIREL 240 MKVDGLTNDE VKSHLQKYRL HTRRPTPATP NNGNGQTPQV VFVGGIWVQP SEYAAAAASA 300 AALGDPSSVT TAANRIYAPV AAPPPAIQHM AVHRLQQKKQ SDSSHSEERI SHSGGVQHSN 360 SPATSSSTHT TTSSPAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-13 | 206 | 259 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 206 | 259 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 206 | 259 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 206 | 259 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-13 | 206 | 259 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109406.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109406.1 | 0.0 | transcription factor HHO3 | ||||
Swissprot | Q9FPE8 | 1e-101 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | W9S2C0 | 0.0 | W9S2C0_9ROSA; Two-component response regulator | ||||
STRING | XP_010109406.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 2e-89 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21395205 |
Publications ? help Back to Top | |||
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