PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109305.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 145aa    MW: 17084.7 Da    PI: 9.126
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109305.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.2e-09871212155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp++ +++ L++ +gL+++q+ +WF N+R ++
  XP_010109305.1  87 KWPYPTEGDKAALSELTGLDQKQINNWFINQRKRH 121
                     669*****************************885 PP
2ELK38.81.9e-134162122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    ELK+ LlrKYsgy+++Lk+EFs
  XP_010109305.1 41 ELKDKLLRKYSGYISTLKHEFS 62
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.7724161IPR005539ELK domain
PfamPF037892.7E-114162IPR005539ELK domain
SMARTSM011888.9E-84162IPR005539ELK domain
PROSITE profilePS5007111.45161124IPR001356Homeobox domain
SuperFamilySSF466895.43E-1962134IPR009057Homeodomain-like
SMARTSM003897.6E-1063128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-2766124IPR009057Homeodomain-like
CDDcd000866.02E-1073122No hitNo description
PfamPF059207.6E-1781120IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MIVVDGCYCE RYICTSSLKL SGGEIQVVDI MSRQFANEDR ELKDKLLRKY SGYISTLKHE  60
FSKKKKKGKL PKEARQILLD WWTLHYKWPY PTEGDKAALS ELTGLDQKQI NNWFINQRKR  120
HWTPPENMQV AIMEAHSLYG SFCHE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109305.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109305.11e-107homeobox protein knotted-1-like 4
SwissprotQ84JS62e-49KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLW9S2341e-105W9S234_9ROSA; Homeobox protein knotted-1-like 6
STRINGXP_010109305.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-45KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]