PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109133.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 354aa    MW: 38335.9 Da    PI: 10.3345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109133.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13116161247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ I++++ ++Rt+ q+ s+ qky
   XP_010109133.1 116 KPWTEEEHRTFLAGMNKLGKGDWRGISSKFVTTRTPTQVASHAQKY 161
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.993722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.159110166IPR017930Myb domain
SuperFamilySSF466894.31E-16112166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-16113165IPR006447Myb domain, plants
SMARTSM007171.0E-10114164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-11116161IPR009057Homeodomain-like
PfamPF002492.4E-11116161IPR001005SANT/Myb domain
CDDcd001676.59E-9117162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVKEAQRKCS HCGQQGHNSR TCNNRNNVVS PRNRNGNGNG HSFKLFGVNI VEGAEDSMKK  60
SRSMGNLAAL SGGQGKNDVV SGGDDHDDHD PEAGYLSDGV LHNVKRKAAR ERKRGKPWTE  120
EEHRTFLAGM NKLGKGDWRG ISSKFVTTRT PTQVASHAQK YFIRKQAPKD RKKRRSSLFD  180
MPFTQSDDVV PPQGHQVSSM IKPTAETSSR PSRSQGLAEN NPSEILNRFP QLCLDNYPVP  240
VRPGVAPNYL VPYGVGFPGN VQPWPLINIG RPSYLYNVPN VYGSVDNGVP VVVTHPSGIP  300
PPRSPPTSPS IKAAASKDSS ADQTNGLELT IGQPQSKQGS ELSSSPASGA IKVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010109133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109133.10.0probable transcription factor At5g61620
TrEMBLW9S9L10.0W9S9L1_9ROSA; Transcription factor
STRINGXP_010109133.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-46MYB_related family protein