PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 29340.6 Da PI: 5.1626 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 134.3 | 3.7e-42 | 65 | 165 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l+ fw++q ++++t k +h+lPlar+k+i+k++ dvkmisa++P+l+skacelfi+eltlrsw+++ee+krrtl+++dia a+ + + dfl XP_010108900.1 65 LELFWSQQlleMQNTTVGKsQHQLPLARVKRIMKSEGDVKMISADTPILFSKACELFIMELTLRSWMQTEECKRRTLQRCDIARAIRNDELLDFL 159 789*****8665555544569************************************************************************** PP NF-YC 93 vdivpr 98 ++vp XP_010108900.1 160 QEVVPL 165 ***996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.14E-26 | 62 | 159 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-31 | 82 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-17 | 87 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDMNQSMNFI SSPNSNSNPQ VPNFMMPRSS FMLPDYNNYQ QNMSTKQIAE EIRRSHLNQL 60 QKQNLELFWS QQLLEMQNTT VGKSQHQLPL ARVKRIMKSE GDVKMISADT PILFSKACEL 120 FIMELTLRSW MQTEECKRRT LQRCDIARAI RNDELLDFLQ EVVPLSHDCQ KEDESGGKTP 180 EGGENTSTAE ALNLPMMNNL SDDMISMIQQ VPQQFMLDPS IMSSSEFQFL FPSKVSTKFS 240 RDIKEINILL IVNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-32 | 72 | 164 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108900.2 | 1e-174 | nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | W9SQ52 | 0.0 | W9SQ52_9ROSA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_010108900.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 6e-38 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21409721 |