PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 254aa    MW: 29340.6 Da    PI: 5.1626
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108900.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC134.33.7e-4265165298
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     l+ fw++q   ++++t  k +h+lPlar+k+i+k++ dvkmisa++P+l+skacelfi+eltlrsw+++ee+krrtl+++dia a+ + +  dfl
  XP_010108900.1  65 LELFWSQQlleMQNTTVGKsQHQLPLARVKRIMKSEGDVKMISADTPILFSKACELFIMELTLRSWMQTEECKRRTLQRCDIARAIRNDELLDFL 159
                     789*****8665555544569************************************************************************** PP

           NF-YC  93 vdivpr 98 
                      ++vp 
  XP_010108900.1 160 QEVVPL 165
                     ***996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.14E-2662159IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-3182151IPR009072Histone-fold
PfamPF008082.8E-1787150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDMNQSMNFI SSPNSNSNPQ VPNFMMPRSS FMLPDYNNYQ QNMSTKQIAE EIRRSHLNQL  60
QKQNLELFWS QQLLEMQNTT VGKSQHQLPL ARVKRIMKSE GDVKMISADT PILFSKACEL  120
FIMELTLRSW MQTEECKRRT LQRCDIARAI RNDELLDFLQ EVVPLSHDCQ KEDESGGKTP  180
EGGENTSTAE ALNLPMMNNL SDDMISMIQQ VPQQFMLDPS IMSSSEFQFL FPSKVSTKFS  240
RDIKEINILL IVNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-3272164394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108900.21e-174nuclear transcription factor Y subunit C-3
TrEMBLW9SQ520.0W9SQ52_9ROSA; Nuclear transcription factor Y subunit C-2
STRINGXP_010108900.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-38nuclear factor Y, subunit C2