PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108678.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family G2-like
Protein Properties Length: 349aa    MW: 39509 Da    PI: 6.7056
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108678.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.65.7e-331569155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  XP_010108678.1 15 KPRLKWTPELHHRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.0421272IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-311371IPR009057Homeodomain-like
SuperFamilySSF466896.45E-171470IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-221570IPR006447Myb domain, plants
PfamPF002498.5E-91768IPR001005SANT/Myb domain
PfamPF143791.7E-23113159IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQNQNMNLVL STDAKPRLKW TPELHHRFVE AVNQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQKYRLG KSQQSENCSD DKQEDYKEIQ GSDGHFNREI NDGSQSEINE SLKIAEALQL  120
QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYSSSSMGV EFAKTELSRL  180
LNMVNTGCQS SSFSELTEAR ELSLEVIERR SMRRTICSME SSLTSSESSG RKEEEKRPMN  240
SNDWEGNDDD HHQKSNNTNS VELPLMDVHP QHKPWNSETS NGRKRSGNTI SDGVCVEQPV  300
SKRSQNHVEK SNDHLRTSGF LPGTIDLNSQ YQNDFETGPK AIDLNCKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-201471158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108678.10.0myb family transcription factor PHL8
SwissprotF4I2742e-93PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLW9SPH90.0W9SPH9_9ROSA; Myb family transcription factor APL
STRINGXP_010108678.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-93G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]