PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108530.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 294aa MW: 33356.7 Da PI: 5.658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108530.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	84	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.as.......................kapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr llP + +kK+s ++ ++ +YI +Lq XP_010108530.1 84 KKLNHNASERDRRKKINHLYSSLRALLPAsDHteekddlnrsvtimateeylyisFYLNKKMSIPGTVSRVLKYIPELQ 162 6789*************************66677777777777777777777777556677777777777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.176	83	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-11	84	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	84	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.55E-8	84	166	No hit	No description
Pfam	PF00010	6.6E-8	84	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-6	89	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	138	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MLALSPTLFS TNVPYWPLEE PVGHDNQNYL YRDISEPANS DQSVFLNSFP TPPPSDQRSR 60 AELDCLATPT TTKAISSDLI MVVKKLNHNA SERDRRKKIN HLYSSLRALL PASDHTEEKD 120 DLNRSVTIMA TEEYLYISFY LNKKMSIPGT VSRVLKYIPE LQQEVEGLIQ KREALLSMTK 180 SKQQENLQVH QEINYQTKST TRTPLSSVSA SQLNNKEVLL QISAFKLNKD PLSEILHNLE 240 EDGLSVLNAS SFESFDGRIF YNLHLQVEGP YNVECGTLGG KFVSLYDDKK ELLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108529.2	1e-165	uncharacterized protein LOC21402320
TrEMBL	W9RZX0	0.0	W9RZX0_9ROSA; Transcription factor ORG2
STRING	XP_010108530.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	8e-45	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21402321