PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108517.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GeBP | ||||||||
Protein Properties | Length: 369aa MW: 40231.9 Da PI: 7.1067 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 104.4 | 9.1e-33 | 157 | 250 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 klfqrl seeDeiv+L+Glid++ak+g +p + d+ +f+ f+kks++++v+k ql++K+rrLKkK+ ++ ++ k+ + +k+h+q++felskk XP_010108517.1 157 KLFQRLGSEEDEIVILKGLIDYAAKRGGDPAAtDMYGFHYFIKKSLHVEVTKAQLSNKVRRLKKKYSNNAAR----KKYNPTKPHEQNVFELSKK 247 579*************************99888***************************************....788899************* PP DUF573 95 iWg 97 iWg XP_010108517.1 248 IWG 250 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-29 | 159 | 250 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MAPRRASPLD VPPAVSSSEE EETSSEEEET SEDAQVQATP KPTVISPNTK KTDDDSESDD 60 ESSSESEPAD LTVQPLPSKP MEEKGARSKS SVAATPEKKS VAKRPRESET TAKDSKKRVK 120 KKSDPEVPPP EADGDGGGAS DEEQEESKKP GGDDSKKLFQ RLGSEEDEIV ILKGLIDYAA 180 KRGGDPAATD MYGFHYFIKK SLHVEVTKAQ LSNKVRRLKK KYSNNAARKK YNPTKPHEQN 240 VFELSKKIWG GGGSRAGASS PKSNGAAKSN GKATLDLPAA PKDGSRKSEI GGKSSVSVRS 300 SEMIRYGMKS LPEEVVKKGL DLLPESKKAE LDAMWKKLHI DELELFVEKN QLMNEQVKLV 360 LEKLKSSDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 229 | RLKKKYSNNAARKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108517.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108517.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | W9S7U6 | 0.0 | W9S7U6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108517.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-25 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Entrez Gene | 21402308 |