PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108441.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 594aa    MW: 68113.4 Da    PI: 10.1319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108441.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-15503590998
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE- CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfr 98 
                       l ++ l+lp +fa ++ +k+ +++tl+      rsW v+l    + ++y++++GW+ F+k+n    gD+++F+l+ ++ +  ++v+++r
  XP_010108441.1 503 GQLGKNALYLPGSFAWSYFMKNSQTTTLQ---VAERSWPVNLLAYPSASTYMFSGGWSAFAKENSPSPGDICIFELIkWNYQVVFKVSIYR 590
                     5566778***********77755544444...467*******99999999*************************9967677767777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-1813116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1614116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-719114No hitNo description
PROSITE profilePS5086310.61620116IPR003340B3 DNA binding domain
SMARTSM010192.2E-521116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-10230306IPR015300DNA-binding pseudobarrel domain
CDDcd100177.32E-7235304No hitNo description
Gene3DG3DSA:2.40.330.101.1E-5269306IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.823270306IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-8347402IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-8348403IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-6351401No hitNo description
Gene3DG3DSA:2.40.330.109.2E-17493590IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15494590IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.462495592IPR003340B3 DNA binding domain
SMARTSM010191.5E-9495592IPR003340B3 DNA binding domain
PfamPF023625.1E-13502590IPR003340B3 DNA binding domain
CDDcd100172.27E-15510590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MASGHREDDV HTKFSPTTPH FFKIVLEDTH QNNKLQIRRR IVSKCGDILS DHVFLKLPHC  60
GSLRWEVGLT KCDDGKVWLD KGWPEFRDYC SLVRGNLLVF RFEGNSQFSV LIFDSSTTEI  120
EYNYQRQQHN NRDSFVKEES SGDQDHDVEF VETLERRFSL APNVTREKSD PLQISSRSHK  180
RRRITSPLAM IDFQDRKEGD GEKFNISPPK WRQRLTEEQK AQALRRASSF KSKHPFFMVV  240
MQPSSLEAKY FVNLPCLFAT KYLSKSAETG SREFAQDNDL KVGDVCAFVL TKSIRIVFEV  300
SIFRKNEIGN SSLLPVHEAA TISSKLESRK TLNKKARADL ENVRGFRSEN PFFTVAMRAS  360
YAARKGTFHI PCNFAKTYIN KKKTNAILEV SDGRSWPVLY RLVRKQPNLS NRRELPSYNE  420
LGCTRNNEIS FPLNSITKQE QEEIVVELKP EGKFRKVRSN ENKTRGQAIQ RPSSSGRAGR  480
ASEAAGCKFC FKSPQFRVDF ASGQLGKNAL YLPGSFAWSY FMKNSQTTTL QVAERSWPVN  540
LLAYPSASTY MFSGGWSAFA KENSPSPGDI CIFELIKWNY QVVFKVSIYR KLAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029280.10.0uncharacterized protein LOC21397262
TrEMBLW9S7N10.0W9S7N1_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010108441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-33B3 family protein