PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010108419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 360aa MW: 41354.9 Da PI: 5.4611 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.6 | 2e-33 | 135 | 215 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +kk rh k++T++g+RdRRvRlsa++a++f+d+qd+LG+d++ k+i+WL+++ak+ai +l++++++++ ++++ + + + + XP_010108419.1 135 KKKERHNKVCTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDQPTKAIDWLIEKAKAAIEALAELPAQNNDSFDTTDCVTQPQ 215 69*************************************************************666663332222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-30 | 135 | 219 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.626 | 136 | 194 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MMSYYLLDSV PHQILQQREL KDDEKEEKAR GQDRDQAEEE DEEGEQGQGQ QMIFGKYQHV 60 QLPLCDKRYD IDYEKSCRKL CYSKQLALEK HRIVKFERGE RRKQASARPS SKPTQENEAG 120 DALQVHGGHV VRFIKKKERH NKVCTSKGPR DRRVRLSAHT AIQFYDVQDR LGYDQPTKAI 180 DWLIEKAKAA IEALAELPAQ NNDSFDTTDC VTQPQSIMRD KNLYPLQYHQ GCDNWPQKIS 240 LGSTSKCDKE EQLHLNNEGI FSMVSQFQDY PTEQNSTQGL CLSLQSSEDQ DLYLHHSSPI 300 DFDEQALNSM SSLTDSTSID TGRFQSLMAI NSSAGNEGAQ FFFNSLPSLL QQPFLRENQF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 141 | 194 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 141 | 194 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010108419.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108419.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_024029269.1 | 0.0 | transcription factor TCP4 | ||||
TrEMBL | W9RZN4 | 0.0 | W9RZN4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108419.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14863 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-29 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21389582 |