PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108383.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 410aa    MW: 45901.8 Da    PI: 9.365
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108383.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.8e-102522901854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     lFe   ++yp+ +e+  LA+++gL+ +q+++WF N R +
  XP_010108383.1 252 LFEHflHPYPTDSEKHMLARQTGLSRAQISNWFINSRVR 290
                     6775669******************************88 PP
2BELL75.48.8e-25126191772
            BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     kk ++L  +leeV++r k y++q+q v+ sF+avaglg+a+p+++ A +aiS hF cLk+ai +q+
  XP_010108383.1 126 KKDSRLAFMLEEVYNRCKLYCQQIQSVVTSFKAVAGLGNAAPFITSAIRAISNHFGCLKNAILGQL 191
                     5779***********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-2671189IPR006563POX domain
PfamPF075265.0E-2576187IPR006563POX domain
PROSITE profilePS5007112.633231294IPR001356Homeobox domain
CDDcd000864.73E-13234295No hitNo description
SMARTSM003894.9E-11234298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-27237298IPR009057Homeodomain-like
SuperFamilySSF466891.07E-17238301IPR009057Homeodomain-like
PfamPF059205.9E-18251290IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MADQKSFELF QVLPLPTSST SFPSPKHDAV SNSYPPLYQL FSDNQLHGYG AVLLPDNNKL  60
IGCSVPLGPF TGYASILKRS SFLKPAQQLL EDFCGSGFRV LEDPSTDDLS LGHSAWANYR  120
VAYQFKKDSR LAFMLEEVYN RCKLYCQQIQ SVVTSFKAVA GLGNAAPFIT SAIRAISNHF  180
GCLKNAILGQ LHFNLADVSR VNKDDGTPSL FLAPKTSFGS KPIHNFPNLR SSIWRSQRGL  240
PEHAVAVLKK WLFEHFLHPY PTDSEKHMLA RQTGLSRAQI SNWFINSRVR LWKPMVEEIH  300
VLQAQKTQIP LPDAINRNHN TPSLEKLETP ISNFDNLPKG REISSKRSRN EGHDDNSSYS  360
RDKGRSNVEA YYVDNYSKNN SSSGGSSASL ALNLQHNMAN CEAAAFKNWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-15235291865Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108383.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-70BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLW9RZF10.0W9RZF1_9ROSA; BEL1-like homeodomain protein 9
STRINGXP_010108383.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-72TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]