PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108302.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CO-like
Protein Properties Length: 333aa    MW: 36407.7 Da    PI: 6.1806
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108302.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ +  +lC +C  + H  
  XP_010108302.1  4 KLCDSCKSATATLFCRADAAFLCVNCDANVHAA 36
                    68**************************99954 PP
2zf-B_box27.85.2e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_010108302.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT69.96.3e-24272315144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010108302.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 315
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.808148IPR000315B-box-type zinc finger
PfamPF006434.4E-6443IPR000315B-box-type zinc finger
CDDcd000211.08E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006432.3E-74691IPR000315B-box-type zinc finger
CDDcd000218.54E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787272314IPR010402CCT domain
PfamPF062034.9E-18272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DAAFLCVNCD ANVHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPLYERVSS AKSGTVNFLS DRFVSDDGDA  120
DAEASTEEAE AASWLLPNPK AVESPDLNSG QYTFPEMEPY LDLDYGPVDL KLEAHEQNSS  180
GTDGVVPVHN KSPQAPIVNE PCFDLDFSAS KPFVYGYNAH CLSHSVSSSS LDVGVVPDGN  240
AITDISDAYT TPMNSGVDSS ARHPVQISAA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AETRPRIKGR FAKRTEVELD VDRISGYGVV PTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108302.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-145COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLW9S9Z10.0W9S9Z1_9ROSA; Zinc finger protein CONSTANS-LIKE 4
STRINGXP_010108302.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-141CONSTANS-like 4