PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108211.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27055.5 Da    PI: 5.0021
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108211.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.1e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien s rqvtf+kRrng++KKA+ELSvLCda+v viifsstg+lye++
  XP_010108211.1  9 KKIENLSSRQVTFCKRRNGLFKKAQELSVLCDAQVGVIIFSSTGRLYEFA 58
                    68***********************************************8 PP
2K-box46.41.7e-16901701090
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                     ++++ ++ +q+++ + +e+e+L+ ++ +++G+dL+ Ls+k+Lqq+e++L +++  i+skK++  l++ e l+k  +e++++
  XP_010108211.1  90 TDTEKSQPEQDANEVMDETEMLRLTLMRMMGKDLDGLSFKDLQQMEDKLAEGILAIKSKKEQKALTENEILRKELNEMRQN 170
                     45566677899**************************************************************99998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.104161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-30272IPR002100Transcription factor, MADS-box
CDDcd002655.62E-41271No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1091169IPR002487Transcription factor, K-box
PROSITE profilePS512979.57794182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIKK IENLSSRQVT FCKRRNGLFK KAQELSVLCD AQVGVIIFSS TGRLYEFANT  60
KMEDILTKYN NKGTESSAPE PSEDLEETDT DTEKSQPEQD ANEVMDETEM LRLTLMRMMG  120
KDLDGLSFKD LQQMEDKLAE GILAIKSKKE QKALTENEIL RKELNEMRQN YLTPILTSNP  180
LDWRSSSLKS TTKSVDQENE HFADTSLQLR LSSDFGRKRK APKIESSTSP ESASQVASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20191183Myocyte-specific enhancer factor 2B
1tqe_Q1e-20191183Myocyte-specific enhancer factor 2B
1tqe_R1e-20191183Myocyte-specific enhancer factor 2B
1tqe_S1e-20191183Myocyte-specific enhancer factor 2B
6c9l_A1e-20191183Myocyte-specific enhancer factor 2B
6c9l_B1e-20191183Myocyte-specific enhancer factor 2B
6c9l_C1e-20191183Myocyte-specific enhancer factor 2B
6c9l_D1e-20191183Myocyte-specific enhancer factor 2B
6c9l_E1e-20191183Myocyte-specific enhancer factor 2B
6c9l_F1e-20191183Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029134.11e-164MADS-box transcription factor 23
TrEMBLW9RYW81e-174W9RYW8_9ROSA; Agamous-like MADS-box protein AGL18
STRINGXP_010108211.11e-175(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-46AGAMOUS-like 18