PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LSD | ||||||||
Protein Properties | Length: 184aa MW: 19833.5 Da PI: 4.6305 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.3 | 1.1e-12 | 92 | 116 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+G+ V+C++C+tV XP_010108198.1 92 CGSCRRLLKYPPGSQQVQCSCCQTV 116 ************************9 PP | |||||||
2 | zf-LSD1 | 43 | 7.4e-14 | 130 | 154 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ V+C++C++V XP_010108198.1 130 CGSCNVLLMYPYGASQVKCSCCQFV 154 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.0E-16 | 89 | 119 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-9 | 92 | 116 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-12 | 127 | 155 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.9E-11 | 130 | 154 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MELESKAKEE VEVEVKVEEV EEDEGPPPGY QTILPPLQPP SPPPPQPSSS PPKEAPEPML 60 TPSTDSTPTL TPTHTPTPTP KSTLSEIAQI VCGSCRRLLK YPPGSQQVQC SCCQTVNFVL 120 EAHQVGQVKC GSCNVLLMYP YGASQVKCSC CQFVTEIGAH NQRPPWSAQQ GQPLPALNPF 180 QSTA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108198.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108198.1 | 1e-128 | protein LOL2 | ||||
TrEMBL | W9SNB3 | 1e-127 | W9SNB3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108198.1 | 1e-128 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 3e-32 | lsd one like 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397659 |