PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 42716 Da PI: 9.1309 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114 | 2.1e-35 | 111 | 214 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg... 88 a ++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + ++ + XP_010108052.1 111 AIRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggaL----KIPTTTNA-Npvd 200 6899************************************************************77777444322210....11111111.1233 PP TCP 89 ..kaaksaa.kskksq 101 +s+a + kk++ XP_010108052.1 201 etT--TSSAaTAKKRK 214 221..11111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-28 | 116 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.003 | 117 | 171 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MTSHPQEMDL EDDGGSSDLS TSAGEPEKNT NPNPNPEHNN KNNRNNVNGV SRSANFAEMT 60 AFQALPMKEE PLDSDPDQKV QHQQSTSVVP VAMQMQVAPM PLPMPMPVST AIRRSSTKDR 120 HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHAEQAIIE ATGTGTVPAI 180 AVSVGGALKI PTTTNANPVD ETTTSSAATA KKRKRPSNSE FVDLTDAVSQ SSGLAPIGPA 240 VPQGLVPVWA VAGNAAGVNM MVPANAFWMI PPTAAAAGPG PSRQQPQIWA LSPTVTPVFN 300 MAARPISSFV ANQPAVVGPA GVPSSVVEVP SHVAHHGGGL STSTTSVGPT AAKKTSSTMA 360 PSLSSSGGRG GGTKAQMLRD FSLEIYEKQE LQFMGRPGNH QTQSSKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00635 | PBM | Transfer from PK14653.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108052.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-71 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | W9SMV8 | 0.0 | W9SMV8_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108052.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-56 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21405911 |