PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108028.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 367aa MW: 42468.2 Da PI: 6.7326

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108028.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.2e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL++k+++++++l +vikevd+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_010108028.1 7 VPPGFRFHPTDEELVDYYLRRKIASRRFDL-DVIKEVDLYKIEPWDLQElcKIGSEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 100 69**************************.9***********954555554445******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_010108028.1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-61	5	155	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	7	155	IPR003441	NAC domain
Pfam	PF02365	7.7E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRRKIA SRRFDLDVIK EVDLYKIEPW DLQELCKIGS 60 EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQASWVVC RVFKKKIATS NMHRASEHEL PCWYDEQVSF 180 MPDLESPKQN SNSHLANNNY QLPYPCKKEL DHHLPYQLPQ EHFLPLLESP KLFQSTATMS 240 STTPSVASYS LLLNHASALH SSSLRQGEEI QHSHDQNFNP VVHGSNYNNV QIVDNHDQVT 300 DWRVLDKFVA SQLSQEDVSR ENSFSNAQSN SLHAPNNANV IDRHWEKQEQ VPENASSSAS 360 CQIELWK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNAFSHVPPG FRFHPTDEEL VDYYLRRKIA SRRFDLDVIK EVDLYKIEPW DLQELCKIGS  60
EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQASWVVC RVFKKKIATS NMHRASEHEL PCWYDEQVSF  180
MPDLESPKQN SNSHLANNNY QLPYPCKKEL DHHLPYQLPQ EHFLPLLESP KLFQSTATMS  240
STTPSVASYS LLLNHASALH SSSLRQGEEI QHSHDQNFNP VVHGSNYNNV QIVDNHDQVT  300
DWRVLDKFVA SQLSQEDVSR ENSFSNAQSN SLHAPNNANV IDRHWEKQEQ VPENASSSAS  360
CQIELWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-51	6	156	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108028.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029028.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-131	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	W9SFC6	0.0	W9SFC6_9ROSA; NAC domain-containing protein 7
STRING	XP_010108028.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-120	NAC 007

Link Out ? help Back to Top
Entrez Gene	21384338

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]