PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 593aa MW: 65532.4 Da PI: 6.7524 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.6 | 5.5e-12 | 278 | 334 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g XP_010107987.1 278 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 334 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 46.4 | 9.9e-15 | 379 | 428 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010107987.1 379 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 428 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-14 | 278 | 344 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.59E-18 | 278 | 344 | No hit | No description |
Pfam | PF00847 | 6.4E-9 | 278 | 334 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-12 | 279 | 343 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-22 | 279 | 348 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 279 | 342 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 280 | 291 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-24 | 377 | 438 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 377 | 438 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.137 | 378 | 436 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 378 | 436 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-34 | 378 | 442 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 379 | 428 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 418 | 438 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIHEGYA TAGDDQDHGA SGFPSPMSAV MPLRSDGSLC VPTDPFRRHE 60 DWRYENSNMG MNIGTTTNVS NPSEEGPKLE DFLGCCYSNS PSDPDHHHHH DEAKVYCNQE 120 NPEISNTDIS KINVNLAPSF NPNGEMETRE NTNNNNNNPT NLSSVIQSYG HYSTENSHVG 180 LIPTSNGVYK SWLGQTLPYH HGDDDQKSAA DQSTGCSFQS LSLTMSPTSQ DGSRHHHHVG 240 AISTLQVSDS RKRSVNGKSS AKEPVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS 300 CRKEGQTRKG RQGGYDKEEK AAKAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE 360 FVANLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD 420 IAAIKFRGTS AVTNFDISRY DVKRICSSST LIAGDLAKRS PKDSAPTTAS TAALEDFNSC 480 AASSSTPQKP LLAITNGERS DELADMVWTA NADHDMNNPP HEINSDTNNR NSSNGGDQFG 540 GGGGGDFSQA YFMQGNAKFD QDSNGGNNHE HGRIGNLGLV QQQHVPMFAL WNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107987.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229642 | 1e-149 | KP229642.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF19) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029013.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-130 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | W9RYB0 | 0.0 | W9RYB0_9ROSA; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_010107987.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-110 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21384920 |
Publications ? help Back to Top | |||
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