PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107836.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

TALE

Protein Properties

Length: 684aa MW: 74834.1 Da PI: 6.3862

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107836.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	424	461	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + XP_010107836.1 424 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 461 664459******************************88 PP
2	BELL	129.8	8.9e-42	286	357	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+gsakpYt+lAl++iSrhFrcL+dai++qi XP_010107836.1 286 EKQDLQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGSAKPYTALALQTISRHFRCLRDAITGQI 357 6899*******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.2E-68	208	355	IPR006563	POX domain
Pfam	PF07526	5.6E-52	214	354	IPR006563	POX domain
PROSITE profile	PS50071	12.163	402	465	IPR001356	Homeobox domain
CDD	cd00086	4.50E-13	405	466	No hit	No description
SMART	SM00389	1.0E-9	405	469	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-17	406	472	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-29	408	471	IPR009057	Homeodomain-like
Pfam	PF05920	4.6E-18	422	461	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MATYYSSSNN QREAAPMLYS REHLPSSYPE ASVLPTNMMM YMNSGSYPDA LGGNSQQQSN 60 CNIEMPPMGA SDSTPQQQDI LSNLGGGSRI GEHNFGEWRD GKNDLVVTHS MGGGAPSILH 120 GGQNLQGGQG LSLSLGTQIP SGIQMPSISF RNPNMGFASF LSPNPSISGE RSGCSRDDQP 180 RNVEYLAPGF PGGNQDLSKG ELSPYGLSSV ARTVPSSKYL KAVQQLLDEV VNVRKALKQH 240 DNERGQTGQE QRMKSSKEGD EGSKNESTPG GGESTTNSQP ELSHAEKQDL QNKLTKLLSM 300 LDEVDRRYKQ YYHQMQIVVS SFDAIAGCGS AKPYTALALQ TISRHFRCLR DAITGQIKAT 360 RKSLGEEDAP GNVKGVGISR LRYVDQQLRQ QRALQQLGMM QQHAWRPQRG LPESSVSILR 420 AWLFEHFLHP YPKDSDKIML ARQTGLTRSQ VSNWFINARV RLWKPMVEEM YKEETGDAEM 480 DSNSSSENSA KATKGDVRTS EDKGADMQQQ SASSTGTERC STGQFMESKT DHVPDVEMAG 540 SIRSASFHNV PRREAEAEYG LIMKRREEQR PGMDDCSLFP DTMVQSDGSN ERYMAAAAAY 600 HMSELGRFGG GSGVSLTLGL QHCDVGSLPM SSGTHHSFVA MRGDDIYNAA ASSVGAETAD 660 FECVNSGNQQ PRFASSHLLH DFVV

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MATYYSSSNN QREAAPMLYS REHLPSSYPE ASVLPTNMMM YMNSGSYPDA LGGNSQQQSN  60
CNIEMPPMGA SDSTPQQQDI LSNLGGGSRI GEHNFGEWRD GKNDLVVTHS MGGGAPSILH  120
GGQNLQGGQG LSLSLGTQIP SGIQMPSISF RNPNMGFASF LSPNPSISGE RSGCSRDDQP  180
RNVEYLAPGF PGGNQDLSKG ELSPYGLSSV ARTVPSSKYL KAVQQLLDEV VNVRKALKQH  240
DNERGQTGQE QRMKSSKEGD EGSKNESTPG GGESTTNSQP ELSHAEKQDL QNKLTKLLSM  300
LDEVDRRYKQ YYHQMQIVVS SFDAIAGCGS AKPYTALALQ TISRHFRCLR DAITGQIKAT  360
RKSLGEEDAP GNVKGVGISR LRYVDQQLRQ QRALQQLGMM QQHAWRPQRG LPESSVSILR  420
AWLFEHFLHP YPKDSDKIML ARQTGLTRSQ VSNWFINARV RLWKPMVEEM YKEETGDAEM  480
DSNSSSENSA KATKGDVRTS EDKGADMQQQ SASSTGTERC STGQFMESKT DHVPDVEMAG  540
SIRSASFHNV PRREAEAEYG LIMKRREEQR PGMDDCSLFP DTMVQSDGSN ERYMAAAAAY  600
HMSELGRFGG GSGVSLTLGL QHCDVGSLPM SSGTHHSFVA MRGDDIYNAA ASSVGAETAD  660
FECVNSGNQQ PRFASSHLLH DFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	9e-17	411	468	1	58	Homeobox protein Meis1
4xrs_B	9e-17	411	468	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107836.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107836.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028943.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028944.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028946.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028947.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028948.1	0.0	BEL1-like homeodomain protein 6
Swissprot	O65685	1e-139	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	W9S8M2	0.0	W9S8M2_9ROSA; BEL1-like homeodomain protein 6
STRING	XP_010107836.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-123	BEL1-like homeodomain 6

Link Out ? help Back to Top
Entrez Gene	21410041

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]