PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 279aa MW: 31735.7 Da PI: 6.8008 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.4 | 1.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELSvLCdaeva+++fsstgkl+eyss XP_010107679.1 9 KKIDNVTARQVTFSKRRRGLFKKAQELSVLCDAEVALVVFSSTGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 38.3 | 5.5e-14 | 86 | 166 | 16 | 96 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++ + +L ke+e ++R+++G dL+ L+l eLqqLe++Le +l+++ + K++ +++ i l k l+++ k+L++ XP_010107679.1 86 HYNMNRFRLSKEVEDKSLKLRQMMGVDLQGLTLDELQQLEKKLEAGLTRVHEIKENRFMSDIAALEKEVMVLHSKGKTLES 166 5566666899999999999***************************************************99999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.39E-38 | 2 | 68 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-30 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.978 | 84 | 183 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.2E-12 | 91 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAREKIKIKK IDNVTARQVT FSKRRRGLFK KAQELSVLCD AEVALVVFSS TGKLFEYSSS 60 SMSDLIERRN IQHNNPQQLD LELQLHYNMN RFRLSKEVED KSLKLRQMMG VDLQGLTLDE 120 LQQLEKKLEA GLTRVHEIKE NRFMSDIAAL EKEVMVLHSK GKTLESDNNV NNIAKELDQR 180 MSSSDQSATT ISNTPSLEND CSDTSLRLGA QEDGYGETRS GEIHRDKRLQ FVEIEDEGTI 240 GPLRIGHGLV LGGYREGRRE ASRRSSEQGT QCDSSESWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 78 | 1 | 77 | MEF2C |
5f28_B | 1e-19 | 1 | 78 | 1 | 77 | MEF2C |
5f28_C | 1e-19 | 1 | 78 | 1 | 77 | MEF2C |
5f28_D | 1e-19 | 1 | 78 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107679.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028815.1 | 1e-150 | MADS-box protein SVP | ||||
Refseq | XP_024028816.1 | 1e-150 | MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 9e-67 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | W9RXF0 | 0.0 | W9RXF0_9ROSA; MADS-box protein SVP | ||||
STRING | XP_010107679.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-62 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21391091 |