PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 214aa MW: 22707.3 Da PI: 8.0273 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.5 | 1e-33 | 59 | 158 | 7 | 89 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+++i ++tg+++ +a + ++++ + ++s++s++ XP_010107507.1 59 SARDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEASIVAATGSGTLPAGPVsTSSAAVTASSSPSIScraqpvsavagg 153 5689*******************************************************666664442222222222222222333333344444 PP TCP 89 ....k 89 + XP_010107507.1 154 qglfA 158 33431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.9E-30 | 59 | 207 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.948 | 60 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASEIALHHK FSASASSSDG NSSDAVVPSH AVAITEARTT QQQQQEQLAV ADPRKVSSSA 60 RDRHTKVNGR GRRVRMPAMC AARIFQLTRE LGHRSDGETI EWLLRHAEAS IVAATGSGTL 120 PAGPVSTSSA AVTASSSPSI SCRAQPVSAV AGGQGLFAAM TAAPAQPPPP NCRLDLCQPV 180 TLEYHRNMSF TTLLLQSSTT EAEQRQQEEA LREH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107507.2 | 1e-155 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 5e-34 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | W9S7N4 | 1e-153 | W9S7N4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010107507.1 | 1e-154 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21407102 |