PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107355.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CO-like
Protein Properties Length: 447aa    MW: 47908.4 Da    PI: 4.9772
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107355.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.7e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ +++++   +C+++  +lC +C  + H+       H++
  XP_010107355.1  4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box22.91.7e-074689441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C++++++++   C + +  lC++C   +H +      H++++
  XP_010107355.1 46 LLCERCNSQPALVRCAEERISLCQNCDWLGHGSstsassHKRQT 89
                    57*****************************4488889998876 PP
3CCT59.98.5e-21390432143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R  a+lRYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrFvk 
  XP_010107355.1 390 RSDAVLRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFVKV 432
                     889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456147IPR000315B-box-type zinc finger
SMARTSM003361.9E-8447IPR000315B-box-type zinc finger
CDDcd000212.17E-7447No hitNo description
PROSITE profilePS501198.9874390IPR000315B-box-type zinc finger
CDDcd000213.32E-54790No hitNo description
SMARTSM0033624890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.09390432IPR010402CCT domain
PfamPF062032.0E-15390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGYMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLLCER CNSQPALVRC  60
AEERISLCQN CDWLGHGSST SASSHKRQTI SCYSGCPSAA ELSSIWSFVL EFPSGGESAC  120
EQELGLMSIN ENSADKAQGG PSENASGTVG LNDMPSIGKA SACPSSSSVP KHNAASQVLD  180
LPVESANATF PKLSFAGTKG PELCGNDDMY ADLDMDEVDL NFENYEELFG LALNNSEELF  240
ENGGIASLFG TTDVSGADSN CQGTVAAESD LGFPSGVFYG RIWDSISVFS TEGGLRVTYF  300
IALTIGSVGL LNAMQPACST AASADSAMSA KTEPVLCFTK QGHSSLSFSG VTGESSAGDY  360
QDCGASQMLL MGEPPWCPPS HENSLQSANR SDAVLRYKEK KKARKFEKRV RYASRKARAD  420
VRKRVKGRFV KVGDAYDYDP LNQTRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028610.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-146COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLW9RWJ70.0W9RWJ7_9ROSA; Zinc finger protein CONSTANS-LIKE 9
STRINGXP_010107355.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-107CONSTANS-like 9