PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107287.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24214.4 Da    PI: 8.8529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107287.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.5e-26955147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+i+n + rqvtfskRr g++KKAeELSvLCda+v +iifsstgkl+
  XP_010107287.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIIFSSTGKLF 55
                    68*******************************************97 PP
2K-box44.47e-16871601992
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                      ++++L kei +  +++R+l Ge+L+ L+++eLq+Le+ Le++l+++ +kK e ++++i++lq+k  el++++ 
  XP_010107287.1  87 SNHSRLSKEIAEKSHQLRQLRGEELQGLNIEELQRLEKSLESGLSRVIEKKGEKIMKEINDLQRKAMELSQRQA 160
                     56889999999999*******************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.95157IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-26165IPR002100Transcription factor, MADS-box
CDDcd002652.05E-33272No hitNo description
PRINTSPR004045.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.80782165IPR002487Transcription factor, K-box
PfamPF014863.2E-1387159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVGLIIFSS TGKLFDMKEI  60
LERHNLHSKN LEKLEQPSLQ LQLVENSNHS RLSKEIAEKS HQLRQLRGEE LQGLNIEELQ  120
RLEKSLESGL SRVIEKKGEK IMKEINDLQR KAMELSQRQA GVDSDNVINE EGQSSESITN  180
ACNSSGPPQD CDSTSDTSLK LGRVTTHEYK RKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-17164169MEF2C
5f28_B4e-17164169MEF2C
5f28_C4e-17164169MEF2C
5f28_D4e-17164169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1649981e-69KP164998.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM3) mRNA, complete cds.
GenBankLC0047301e-69LC004730.1 Malus domestica MdJb mRNA for JOINTLESS like protein MdJOINTLESSb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028574.11e-140MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY61e-103JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLW9S7521e-151W9S752_9ROSA; MADS-box protein JOINTLESS
STRINGXP_010107287.11e-152(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.25e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]