PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB_related | ||||||||
Protein Properties | Length: 911aa MW: 100946 Da PI: 6.9526 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.7e-16 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_010107134.1 87 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 131 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-16 | 81 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.544 | 82 | 136 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-16 | 85 | 134 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 87 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 87 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-9 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MRDRASKGCP DGFLILHVFT GRFWRLRVRF VAIPYNVLLS TTTTALPLLA VDVVRNHGKF 60 SLYPLLVRED LKQRQLPRKP YTITKQRERW TEEEHNRFLE ALKLYGRAWQ RIEEHIGTKT 120 AVQIRSHAQK FFSKINSIVI QFKRDNLNKL QVWKSKSGFT EVMGRYQMKL DCEEAIRMTV 180 LYEVLYNLLK VDISQYPCHS VSGRAQPCSK ASKVLPMHEV IERSNNYVHK HCLLEKEALV 240 KGVPVGQAID IDIPPPRPKR KPSNPYPRKT SAGTSTSQVG AKDGKYLSSE FSHHCKQVLD 300 LEKEPLPEKS GGEGKRTNTK ENQDDNCSEV LTQLQEHCSS AFKRSTPKPP VGLRNACTFR 360 ELVPSMKKAN QDDPSGSYVT VELDGNQNVE KADVTEMTVE DNDASRNLKL ENANSSDEKM 420 DDLSCGAPTE EMQTTQKYPR HVPVHVLDGS LGTCTQMPSS DMPFKEPIFH PVGEVRGHHN 480 LFANSAASAT TEHQSNASRT SAHQSFRAFH PPFTPIRHNQ DDYQSFLHMS STFSSLIVST 540 LLQNPAAHAA ASFASTFWPH SNVEASADSP AFNQGCSTPS MAAIAAATVA AATAWWASHG 600 LLPLCAPLNT AFTCTPSISG VPSIHTDQVP AANAERGENS LNPPLQDQAD PEYSDALQAQ 660 HSALKSPAAS SSDSEESGSA KHKSNSKAAD HENAAATTEL HDSNKAKGRK QVDRSSCGSN 720 TASSSEVETD ALEKHENEKE ESKEPDADNP IAEMINRRSK SNSNTSDSWK EVSEEGRLAF 780 QALFSREVLP QSFSPPYDDE NNQENQNDHA KEKQMEEDKD GGASLLDLNI RTSNLQESEK 840 KESPRGDNNL DEGLLTIGLG YGKLKARRTG FKPYKRCSVE AKENLVGSTA SQGEEKGTKR 900 LRLEGEVQLN V |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107134.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028464.1 | 0.0 | protein LHY | ||||
Refseq | XP_024028465.1 | 0.0 | protein LHY | ||||
Refseq | XP_024028466.1 | 0.0 | protein LHY | ||||
TrEMBL | W9S411 | 0.0 | W9S411_9ROSA; Protein LHY | ||||
STRING | XP_010107134.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 2e-77 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21402551 |