PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107127.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 474aa    MW: 53550.6 Da    PI: 6.8418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107127.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.22.9e-32119223199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010107127.1 119 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGDsGK 213
                     89***************************955556889*************************************************6668889* PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l++ ++r+
  XP_010107127.1 214 GRLYIDWRRR 223
                     *******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-41114225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30116222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-27117218No hitNo description
PROSITE profilePS5086315.199119224IPR003340B3 DNA binding domain
SMARTSM010195.1E-24119224IPR003340B3 DNA binding domain
PfamPF023627.0E-30119223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEFVQEDQKE DQYSDNNRDE EAHEDQEEEE EDDEVRNIST TIQPPLSFCA SSSGYIHNNN  60
LQLMDYLSLK SSSSTTTASQ SEEGITENIN NNNNNDGVWL CGGGGVGSGG GGGEREHMFD  120
KVVTPSDVGK LNRLVIPKQH AEKYFPLDSA ANEKGLLLNF EDRNGKPWRF RYSYWNSSQS  180
YVMTKGWSRF VKEKKLDAGD IVSFERGVGD SGKGRLYIDW RRRPHHHHHH FPIDHHHQQQ  240
YHSPYAQSVR WGGRGGSGGG GGLIYSLPSS VSVPMPPPRQ HENFQYNYDI QTYPYHHHHP  300
YHHPPPPPPR HHHQYDHHHH HQHQHQQHQI SGIHNHHNMN NYHVGMSGNV VSPMVIESMP  360
AAAAMAGRHG HHHGKNAPPV APSKRLRLFG VNMEYCPKED HQESDVTMAS LLSTTTSTAH  420
DHDHHHLIPS SSAPFPHQVR LPNNPSPLPI TNLNPAEFSV HKGKSASLSF DLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-671132242114B3 domain-containing transcription factor NGA1
5os9_B4e-671132242114B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259GGRGGSGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066881e-92AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBankAL6629871e-92AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBankAP0149601e-92AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-92CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552331e-92CR855233.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence.
GenBankHM4501521e-92HM450152.1 Oryza sativa Japonica Group RAV-like 1 protein (RAVL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107127.10.0B3 domain-containing protein Os03g0120900
TrEMBLW9RW190.0W9RW19_9ROSA; B3 domain-containing protein
STRINGXP_010107127.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-65B3 family protein