PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010106896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 669aa MW: 75029.4 Da PI: 7.3093 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 1.9e-12 | 332 | 388 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g XP_010106896.1 332 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 388 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 46.8 | 7.6e-15 | 431 | 482 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010106896.1 431 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 482 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 1.44E-6 | 159 | 221 | No hit | No description |
CDD | cd00018 | 5.38E-19 | 332 | 396 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-14 | 332 | 398 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 332 | 388 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.451 | 333 | 396 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 333 | 402 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 333 | 397 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 334 | 345 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 431 | 491 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.44E-25 | 431 | 492 | No hit | No description |
Pfam | PF00847 | 9.4E-10 | 431 | 482 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 432 | 496 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 432 | 490 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-18 | 432 | 490 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 472 | 492 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MKSMNNDENN NNSNNNWLGF SLSPNMKMEV PSSDPHHQHH QTLHKSSSSS SSTSSTTVSS 60 SIPSKNFFHS TAVPLPPQHN YGLYYGVDQG ENGGFYSPLS VMPLKSDGSL CIMEAFSRSQ 120 PQAMATSSTP KLEYFFGTHH YESNDREVMA LSLDSMFYNH HDPNTNQNLL NQDHYHHQNP 180 QQQQQQQHQQ QQQHQQQQQQ QQQQQQQQHY SYNYLDTQIP AMANDGVHHE NMKSNWVSRN 240 YCMAENGGES GASNNSNICG TGYGDFQSLS LSMSPGSQSS CVTAASQQIS PSAAVTDRCA 300 VAMDTKKRGP EKVDQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ 360 SRKGRQGGYD MEEKAARAYD LAALKYWGPS THINFPLENY QKELEEMKNM TRQEYVAHLR 420 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 480 RGLNAVTNFD ITRYDVERIM ASNTLLAGDL ARRTKEAGSP GSEAANHNSA TNSVSDEITM 540 SKDNESESDW KMSLYHSSQL LDQKPLSIDT YKTESFSVAP LSMIHQEVED SAKMGTHLSN 600 ASSLVTSLSS SREGSPDKSS HPTLFGMPPS VSKFFTSPTN AVNSWIPTNQ QRPAISMPHM 660 PIFAAWTDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010106896.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028337.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-171 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | W9S616 | 0.0 | W9S616_9ROSA; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_010106896.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21396178 |