PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010106814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 38288.9 Da PI: 4.9817 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.6 | 5.5e-35 | 84 | 154 | 3 | 73 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ XP_010106814.1 84 AAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGLKSDGETIRWLLEHAEPAIIEATGTGTVPAIAV 154 5799***********************************************************77776333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-27 | 89 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.017 | 89 | 143 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEETDEIIDG TNSDDNVSAS DASIVEPEPP ESNFSAEETA PAPPPQPAVL MKEEFSDAER 60 ELDEKSLPMG LLQVPSPGNK QVVAAKRPSK DRHTKVEGRG RRIRMPATCA ARIFQLTREL 120 GLKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVGGTL KIPTTSPARP NGEIAEVLRK 180 RRRRASNSEF VDVNDQISVS SGLAPIAPTT YGNGAAQGLV PLWPMGPNGG AAGPFLMFPN 240 SGAVPGLANH AQLWAIPAAA ATPSFFGVQA RPISNFVSAL QPVQLRDSQV SSGSVSKTFS 300 STVETTSNAM ISTSDGVGAS SSCSTTTSAT QMLRDFSLEI YDKKELQFLG GRSSNSQTQC 360 SKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 182 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00007 | PBM | Transfer from 495258 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010106814.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106814.1 | 0.0 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 5e-77 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | W9RV44 | 0.0 | W9RV44_9ROSA; Uncharacterized protein | ||||
STRING | XP_010106814.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 4e-78 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21388831 |