PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106750.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28627.7 Da    PI: 9.7073
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106750.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.3e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+i+fss+gklye+ 
  XP_010106750.1  9 KRIENKINRQVTFSKRRNGLLKKAQELSVLCDAEIALIVFSSRGKLYEFG 58
                    79**********************************************95 PP
2K-box104.51.3e-3477171599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++sl e++++s++qe++kLk+++e+Lqr+qRh+lGedL++L++keLq+Le+qLe +l + R++K+++++eq+e+l+kke++l + nk+L+ kle
  XP_010106750.1  77 QDTSLIERETQSWYQEVTKLKAKYESLQRTQRHFLGEDLGPLNVKELQNLEKQLEGALAQARQRKMQIMIEQVEDLRKKERQLGDLNKQLKLKLE 171
                     556678999**********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.067161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-34290IPR002100Transcription factor, MADS-box
CDDcd002652.70E-43273No hitNo description
PRINTSPR004046.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2984170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.83186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAQELSVLCD AEIALIVFSS RGKLYEFGSA  60
GITKTLERYQ RCSFTPQDTS LIERETQSWY QEVTKLKAKY ESLQRTQRHF LGEDLGPLNV  120
KELQNLEKQL EGALAQARQR KMQIMIEQVE DLRKKERQLG DLNKQLKLKL EAEGQNLKAI  180
QSLWSSNVAA GSSNFALHSS SQSNITMDCQ PPEPILQIGY HQYVAVDHEG TSSTIPKGMA  240
GSETNFIQGW VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-228817419104Developmental protein SEPALLATA 3
4ox0_B2e-228817419104Developmental protein SEPALLATA 3
4ox0_C2e-228817419104Developmental protein SEPALLATA 3
4ox0_D2e-228817419104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106750.10.0MADS-box transcription factor 6
SwissprotQ8LLR11e-137MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLW9RV760.0W9RV76_9ROSA; MADS-box transcription factor 6
STRINGXP_010106750.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-109AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]