PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106508.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 638aa    MW: 73243.4 Da    PI: 7.8769
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106508.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.71.2e-1142676363374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av+  d++ a  lL+++++++sp+gd++qRla+yf+ +L+arl+++ + ly+ l ++e s   s++ l+ ++++  ++P+ ++s+  
  XP_010106508.1 267 TLLTQCAQAVAGYDQRTAADLLKQIRQHSSPKGDSTQRLAHYFADGLEARLTGTRTALYSPLVSNEMS---STDILKGHRVYITACPFQRMSFCF 358
                     69***************************************************99****999998888...99********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aNq+I + +++++++HiiDf+i +G+QWp L+q L+  p+gpp+lRiTg++ p++g    e++ et++rL++++++++vp +fnv +a+++e+++
  XP_010106508.1 359 ANQTIRKLAQNATKIHIIDFGILYGFQWPGLIQRLSRSPGGPPKLRITGIELPQPGfrPFERVGETKRRLENYCKRFNVPSQFNV-IAQKWETIS 452
                     *******************************************************9999*************************9.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++++E ++Vn+++++++++de+v ++++rd+vLkl++s++P ++++      +n++ F+ rf eal +ys++fd++e+++pre+e r+  
  XP_010106508.1 453 YEDLNIERDELVVVNCMYRMKHIPDETVVVRNPRDTVLKLIRSINPALFIHGVCSGTYNAPFFASRFREALFHYSSMFDMFETTVPREDEYRMLF 547
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++ gr+ivnv+aceg er+er et+++W+ r ++aGFk+vp+++++ kq++  ++  +++ + ve++ ++l++gWk+r+ +++S+W+
  XP_010106508.1 548 EKAIYGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPIDQEIFKQVRNTVSSSYNKDFVVEQHGQWLIQGWKGRRTYAISCWK 636
                     ************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.744239616IPR005202Transcription factor GRAS
PfamPF035144.1E-112267636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDGLKFNPNP ISLRSDQDFV KETKTHHGNF ETELRQSSEG CSPSDSDSYN ATLKFISEML  60
MEEQDLERKS LMLKDSLALQ AAEKSFYDVL SQNYPSSSSS SSVDQNSGIS ESCSFQTSFS  120
GSSVDTLLVQ DSNSEVQSVV SKFRGKIREE ISFFPKGKPQ ISEREIFEYN LMNGKKNNQR  180
ERDYDDQEEG RRNKQSAVFG DDSEPTEMFD KVLLYDGDND EPNPLYKCSL NGGRAEKLQH  240
NEQAKRSGKS SRSKKQENKA EMVDLWTLLT QCAQAVAGYD QRTAADLLKQ IRQHSSPKGD  300
STQRLAHYFA DGLEARLTGT RTALYSPLVS NEMSSTDILK GHRVYITACP FQRMSFCFAN  360
QTIRKLAQNA TKIHIIDFGI LYGFQWPGLI QRLSRSPGGP PKLRITGIEL PQPGFRPFER  420
VGETKRRLEN YCKRFNVPSQ FNVIAQKWET ISYEDLNIER DELVVVNCMY RMKHIPDETV  480
VVRNPRDTVL KLIRSINPAL FIHGVCSGTY NAPFFASRFR EALFHYSSMF DMFETTVPRE  540
DEYRMLFEKA IYGRDIVNVI ACEGLERVER PETYKQWQVR NTRAGFKQVP IDQEIFKQVR  600
NTVSSSYNKD FVVEQHGQWL IQGWKGRRTY AISCWKPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-492696368375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106508.20.0uncharacterized protein LOC21407972
TrEMBLW9RU650.0W9RU65_9ROSA; Uncharacterized protein
STRINGXP_010106508.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-176SCARECROW-like 14