PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106506.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 747aa    MW: 83552.8 Da    PI: 5.2527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106506.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.25e-1093717441373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs +d +   +lL+++++++sp gd  qRla++f++AL+arla+++++      ++  s+++ s+ l+a++l  ++sP+ k++ 
  XP_010106506.1 371 LRTLLILCAQAVSGNDRRTSGELLNQIRQHSSPLGDGCQRLAHCFANALEARLAGTGTGAQM-YYSTLLSKTSASDILKAYQLSLKCSPFKKMAM 464
                     5789***************************************************5444432.244444446699******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l aN++I++a+e+++ +Hi+Df+i +G+QWp L++ La Rp+gpp+lR+Tg++ p++g   +e++eetg+rLa++++++gvpf++n++++ ++e+
  XP_010106506.1 465 LFANKMIYKAAEKATSLHIVDFGILYGFQWPILIKHLAGRPGGPPKLRVTGIEFPQKGfrPAERIEETGRRLANYCARFGVPFKYNAIASPNWET 559
                     *********************************************************9*****************************9888**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+++++ +E++aVn  ++ ++llde+v+++ +r++vL+l+++++P ++v +  + ++n++ F++rf eal ++sa fd l+++++r++eer 
  XP_010106506.1 560 VRIEDIKIDDDEVVAVNDLMRFKNLLDETVEVNCPRNAVLNLIRKMNPAIFVQSIVNGSYNAPFFVTRFREALFHFSASFDVLDTNVGRNNEERL 654
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + Ere+ gre++nv+aceg +r+er et+++W+ r ++aGF+++pl+++ ++  +  l+  + + + ++e+++++++gWk+r L++ S+W
  XP_010106506.1 655 MFEREFYGREAMNVIACEGPDRVERPETYKQWQVRNMRAGFRSLPLNQELMDMFRGKLKAWYHKDFVIDEDNNWMLQGWKGRILYASSCW 744
                     **************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.978345725IPR005202Transcription factor GRAS
PfamPF035141.7E-106371744IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MDPSFTDFPN EFKTLLSNSN QFLNRLFPDL GFTMDNNHLF LSPVPEPRNL ILSEGESPVP  60
FSTIGPDGAS EDTEFSETVL KYISQILMEE KIEQKPSMFY DPLDLQITEK SFYDALGERY  120
PYSPNYNNGV DPRVETPDNN FSGSSSDYGG SSTSPSTSTS NSASSPHLLS DVGDSKPPSL  180
LQSSLPGDPN SQLNSLSGSQ FSAPISVNEL LAQNIFGDSD SILQFQKGLE EASRFLPKSN  240
QLFIDLESRE YSSELKGLGE PEKLVAVKGE RDSSPNGSRG RKNHEREDVD SEEERSNKQS  300
AVYTDESELS ETFDKVLLFY HDHGCKGVVG ECGQNVGSEA LQPDEQPQGG SGNGGKARGK  360
KKGKKKETVD LRTLLILCAQ AVSGNDRRTS GELLNQIRQH SSPLGDGCQR LAHCFANALE  420
ARLAGTGTGA QMYYSTLLSK TSASDILKAY QLSLKCSPFK KMAMLFANKM IYKAAEKATS  480
LHIVDFGILY GFQWPILIKH LAGRPGGPPK LRVTGIEFPQ KGFRPAERIE ETGRRLANYC  540
ARFGVPFKYN AIASPNWETV RIEDIKIDDD EVVAVNDLMR FKNLLDETVE VNCPRNAVLN  600
LIRKMNPAIF VQSIVNGSYN APFFVTRFRE ALFHFSASFD VLDTNVGRNN EERLMFEREF  660
YGREAMNVIA CEGPDRVERP ETYKQWQVRN MRAGFRSLPL NQELMDMFRG KLKAWYHKDF  720
VIDEDNNWML QGWKGRILYA SSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-483547461379Protein SCARECROW
5b3h_D5e-483547461379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106506.20.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLW9S2B70.0W9S2B7_9ROSA; Uncharacterized protein
STRINGXP_010106506.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]