PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106504.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 683aa    MW: 75702 Da    PI: 4.8675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106504.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3373.4e-1033436781338
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+avs++d + a++lL+++++++sp gd  qRla++f+++ +arla+++se+y+ l++++ts    +e+l+a++++  ++P+ k++ 
  XP_010106504.1 343 LRTLLISCAQAVSANDVRTANELLKQIRQHSSPLGDGSQRLAHCFANGFEARLAGTGSEIYAVLASKRTS---AAETLKAYQAYISACPFKKIAI 434
                     6789*********************************************************999999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I +a+e++ ++Hi+Df+i +G+QWpa+++ L+ R++gpp+lR+Tg++ p++g   +e+++etg+rLa+++e++gvpfe+n+ +ak++e+
  XP_010106504.1 435 IFANNMIQKAAEKAATLHIVDFGILYGFQWPAFIHCLSRRSGGPPKLRVTGIDLPQHGfrPEERVQETGNRLARYCERFGVPFEYNA-IAKTWET 528
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+++++++E+laVn+ l+ ++llde+v ++s+rd+vLkl+++l+P+++v++  + ++n++ F++rf eal  +s+ fd  +a+l++e+  r 
  XP_010106504.1 529 IQIEDFKIDSKEVLAVNCLLRFKNLLDETVVVNSPRDAVLKLIRKLKPDIFVHAIVNGSYNAPFFVTRFREALFNFSSWFDVADATLAHEDPVRL 623
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                     + E+e+lgre+ nvvacegaer+er et+++W+ r ++aG +p+pl+++ +k+ k
  XP_010106504.1 624 MFEKEFLGREVINVVACEGAERVERPETYKQWQGRRMRAGVRPLPLDSELMKKLK 678
                     *************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.511317683IPR005202Transcription factor GRAS
PfamPF035141.2E-100343678IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MDENACQVSN LGLDPNLGGY LNTVNGVMKL SDSSMDPSFA SCLSSNGDSP FDDDDFSDTV  60
LKYINQMLME EDMEAKPCMF HDPLALQAAE KSLYEALGEK YSPSPNQPPF CCAESPDDSV  120
GNISSSSCSS TGVSLNSVSM FVDPAEFKPP ALPNPVPAGF DFQSSSLSSS NFPYNSISEL  180
LVPNSSGENE LMLQFKRGLE EGNKFLPKGN QLVTNLDNFD LSPESKEKKV SDVLVKVEKD  240
ERDDSPSGWR GRKNHEREET DLEDGRSNKQ LAVYTEDDEI SELFDKVLLY GGGKEETPGS  300
TCDGAYQDNE ANESTQQGGR SNGTSSSKTR SRIQDNNKEV VDLRTLLISC AQAVSANDVR  360
TANELLKQIR QHSSPLGDGS QRLAHCFANG FEARLAGTGS EIYAVLASKR TSAAETLKAY  420
QAYISACPFK KIAIIFANNM IQKAAEKAAT LHIVDFGILY GFQWPAFIHC LSRRSGGPPK  480
LRVTGIDLPQ HGFRPEERVQ ETGNRLARYC ERFGVPFEYN AIAKTWETIQ IEDFKIDSKE  540
VLAVNCLLRF KNLLDETVVV NSPRDAVLKL IRKLKPDIFV HAIVNGSYNA PFFVTRFREA  600
LFNFSSWFDV ADATLAHEDP VRLMFEKEFL GREVINVVAC EGAERVERPE TYKQWQGRRM  660
RAGVRPLPLD SELMKKLKAK SGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-4735066926334Protein SCARECROW
5b3h_A6e-4735066925333Protein SCARECROW
5b3h_D6e-4735066925333Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028133.10.0scarecrow-like protein 14 isoform X1
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLW9RUF90.0W9RUF9_9ROSA; Uncharacterized protein
STRINGXP_010106504.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]