PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106407.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 465aa    MW: 52572.6 Da    PI: 6.2484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106407.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4393.4e-134474623374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + + +cA  v++g+le+a+  L+++s+l spdgdp+qR++ayfteALa r++rs+++lykal++++    +++ee+ +++lf+e++P+lk+++ +
  XP_010106407.1  47 RFISACAYYVAAGSLENANIGLEQISHLTSPDGDPIQRMVAYFTEALADRVLRSWPGLYKALNSTKIV--SVDEEILVQRLFYELCPFLKLAYAI 139
                     66789*********************************************************999887..6************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     +NqaI ea+ege+++Hi+D++ sq++Q + Llq+L++Rpegpp+lRiTg+++    +k+ le++  rL++ Ae+l++pf+fn+ v+++le+l++ 
  XP_010106407.1 140 TNQAIFEAMEGEKMIHIVDLNSSQPAQMIDLLQTLSARPEGPPHLRITGIHE----HKDVLEQMSLRLTEEAEKLDIPFQFNP-VVSKLENLDIG 229
                     ****************************************************....9**************************.799******** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPk 237
                     +Lrvk+gEalaV++vlqlh+ll                                                    s+s + +  ++L+++++lsPk
  XP_010106407.1 230 SLRVKSGEALAVSSVLQLHSLLatddempgknsplmsahlhklslmnqrplkdwlekdsfsllrmspdsalsPLSLSASPRMGSFLSALWDLSPK 324
                     *******************************************************************99976444444457788*********** PP

            GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                     v+vv+eqe++hns ++ler++eal yy alfd+l++++pr+  er+kvE++l+g+ei+n+vace +er++rhe+lekW+ rle aGF++vpls++
  XP_010106407.1 325 VMVVTEQESNHNSYNLLERISEALFYYGALFDCLDSTVPRTLVERQKVEKMLFGEEIKNIVACERFERTKRHEKLEKWSLRLELAGFSKVPLSYQ 419
                     *********************************************************************************************** PP

            GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++qa +llr+ + + gy++ ee+g+ +++W+drpL+svSaWr
  XP_010106407.1 420 GMMQATRLLRQSHvFGGYKIIEEKGCSMICWHDRPLFSVSAWR 462
                     *************99***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.44719441IPR005202Transcription factor GRAS
PfamPF035141.2E-13147462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVKDEGSSSA ASSPLQFFPV LPQPPGVCSP YTWLTEPSEE RGLYLIRFIS ACAYYVAAGS  60
LENANIGLEQ ISHLTSPDGD PIQRMVAYFT EALADRVLRS WPGLYKALNS TKIVSVDEEI  120
LVQRLFYELC PFLKLAYAIT NQAIFEAMEG EKMIHIVDLN SSQPAQMIDL LQTLSARPEG  180
PPHLRITGIH EHKDVLEQMS LRLTEEAEKL DIPFQFNPVV SKLENLDIGS LRVKSGEALA  240
VSSVLQLHSL LATDDEMPGK NSPLMSAHLH KLSLMNQRPL KDWLEKDSFS LLRMSPDSAL  300
SPLSLSASPR MGSFLSALWD LSPKVMVVTE QESNHNSYNL LERISEALFY YGALFDCLDS  360
TVPRTLVERQ KVEKMLFGEE IKNIVACERF ERTKRHEKLE KWSLRLELAG FSKVPLSYQG  420
MMQATRLLRQ SHVFGGYKII EEKGCSMICW HDRPLFSVSA WRFKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-563646110378Protein SCARECROW
5b3h_A2e-56364619377Protein SCARECROW
5b3h_D2e-56364619377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106407.10.0scarecrow-like protein 3
RefseqXP_024028049.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLW9RTX80.0W9RTX8_9ROSA; Uncharacterized protein
STRINGXP_010106407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]